Lacrimispora xylanolytica: OW255_03695
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Entry
OW255_03695 CDS
T08662
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lxa
Lacrimispora xylanolytica
Pathway
lxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW255_03695 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxa03019
]
OW255_03695 (rny)
Messenger RNA biogenesis [BR:
lxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OW255_03695 (rny)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
GKRP-like_C
DUF3348
AllH
Motif
Other DBs
NCBI-ProteinID:
WAJ24627
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Position
770472..772025
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AA seq
517 aa
AA seq
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MSVFTTVLVVILASLVVAFITWFAAISYRKNTYESKIGSAEEKSREIIDEALKTAETKKR
EALLEAKEESIKTKNELEKETRERRAELQRYERRVLSKEENLDKKSEAMEKREAGLAARE
DALNKKNAEVESLYEKGIQELEKISGLTSEQAKEYLLKSVEDDVKHDTAKLIKELDNKAK
EEADKKAKEYVVTAIQRCAADHVAETTVSVVQLPNDEMKGRIIGREGRNIRTLETLTGVE
LIIDDTPEAVVLSGFDPVRREVARIALERLIVDGRIHPARIEEMVEKAQKEVETNMREEG
EAAALEVGIHGLHPELIRLLGKLKYRTSYGQNALKHSMEVAQLSGLLAGEIGLDIRMAKR
AGLLHDIGKAVDHEMEGSHIQLGVELCRKYKESAIVLNTVESHHGDVEPQSLIACICQAA
DTISAARPGARRETLETYTNRLKQLEDITNSFKGVDKSFAIQAGREVRIMVVPDQINDDD
MVLLARDISKKIEEALEYPGQIKVNVIRESRVTDYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagtattcacgactgtattggttgtaattttggcatcattagtcgtcgcttttatt
acctggtttgctgcgatttcatatcgtaagaatacctatgaaagtaaaataggttcagca
gaagaaaaatcccgggaaataatagatgaagcattaaagaccgctgagacaaagaagcgt
gaagctctccttgaggcaaaagaagagtcaataaagactaagaatgaactggaaaaagaa
accagggaaagaagagctgagcttcaacgttatgaaagacgagtactaagcaaggaagaa
aacttggacaagaagtctgaggctatggaaaaacgagaagcaggtcttgctgctcgagag
gacgcgctgaataagaaaaatgccgaagttgaatcattatatgaaaaaggcattcaggaa
ctggaaaaaatttccggacttacctccgaacaggcaaaagaatatcttttaaaatctgtt
gaagatgatgtaaaacatgacactgcgaaattaattaaggaacttgacaacaaagctaaa
gaagaagccgataaaaaggcaaaggaatacgtggtcacagccatccaaagatgtgctgcg
gatcatgtggcagaaactacagtttctgttgtacagcttcctaacgatgagatgaaaggc
aggatcatcggtagagaaggccgtaatattcgtacgttagagacccttacaggtgttgaa
ctcattattgatgatacccctgaggcagttgtattgtccggattcgatccggttcgtaga
gaagtggccagaattgcattggaacgactcattgtggatggacgtattcacccagccaga
attgaggaaatggtagagaaggcacagaaagaagtagaaaccaatatgcgtgaggaagga
gaggccgccgctcttgaagtggggattcatggccttcatccagaactcatcagactgctt
ggcaagctgaaatacaggacaagctacggacagaatgcgttaaagcattccatggaggtt
gcccagttatccggtttattagccggagaaatcggacttgatatccgtatggccaagcgt
gccggtttattacatgacatcggtaaagccgttgaccatgagatggaaggatcccatatt
cagcttggtgtagagctctgcagaaagtataaggaatctgcaatcgtgctgaacacggta
gaatctcaccatggcgacgttgagccacagagccttattgcctgtatttgccaggcagcg
gatacaatttctgcggcaagacctggagccagaagagagactctggagacatatacaaac
agattaaaacagttagaagatattaccaactcctttaagggagtggacaagtccttcgcc
attcaggcaggacgtgaggttcggattatggtagttcccgatcaaatcaacgatgatgat
atggtacttttagctcgtgatatttctaagaagattgaagaagccttagagtatccggga
cagatcaaagtcaatgtgatccgggagtccagagtaacagattacgcaaagtaa
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