Lacrimispora xylanolytica: OW255_08585
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Entry
OW255_08585 CDS
T08662
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lxa
Lacrimispora xylanolytica
Pathway
lxa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lxa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OW255_08585 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxa03021
]
OW255_08585 (rpoD)
Transcription machinery [BR:
lxa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OW255_08585 (rpoD)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
WAJ25552
UniProt:
A0ABY7AFN2
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All DBs
Position
1823080..1824222
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AA seq
380 aa
AA seq
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MEKENFLEKLGKLVDLAKTKQNALDVTEINNFFIGEELTAEQMDQIYTYLENRGVDVVPV
IDDSVLADDVLMSEDLLLDDDIDDGFIKDIDEEDIDLDAIDLLEGIGTEDPVRMYLKEIG
TVPLLNAEEELRLAKRKADGDDDAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLG
LIKGVEKFDYTKGYKLSTYATWWIRQSVTRALADQARTIRVPVHMVETINKMSKMQRKLT
LELGYEPSVAELAEALDMTEDKVMEIMQIAREPASLETPIGEEDDSNLGDFVADNNVVTP
EGNVESVMLREHIDALLGDLKERERQVIVLRFGLEDGHPRTLEEVGKEFNVTRERIRQIE
AKALRKLRNPVRSKRIRDFL
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaggaaaattttttagagaagctgggtaagcttgtcgatcttgcaaaaacaaag
cagaatgctttggacgtaacggagattaataacttcttcataggagaagagttgactgca
gagcagatggatcagatttatacgtacctggagaaccgcggcgttgacgtggtcccggtc
attgacgattccgttttggctgatgatgtgctcatgtcagaagatcttcttttagacgat
gatattgatgatggcttcataaaggacatcgatgaagaagatatcgaccttgacgctatt
gatttgcttgaaggcatcggcacagaggaccctgtccgcatgtatttaaaggaaatcggt
acagtaccacttttaaacgcagaggaagaactgcgccttgctaagagaaaagctgatggc
gacgatgacgccaaagaacgtttaatcgaagcaaatttacgtcttgtggtcagtattgca
aagcgctatacgggccgcggaatgagttttcttgatttggttcaggaaggaaacctgggt
cttattaagggcgttgaaaagtttgactataccaaaggttataaattaagtacatatgct
acttggtggatacgtcagtctgtaaccagagcgcttgcagaccaggcaagaacgatccga
gtgcctgtgcatatggttgagaccattaataaaatgtccaagatgcagagaaaacttact
ctggaactgggatatgaaccatcggtggctgaacttgcggaagcattggacatgactgag
gataaggtcatggagatcatgcagatcgccagagaacctgcttccctggaaacaccaatt
ggtgaagaggacgattcaaaccttggggactttgtagcggacaacaatgtggtaactccg
gaaggcaacgtagaatccgtgatgttaagagaacatatcgatgcccttctcggcgattta
aaagagagagagcgtcaggttattgtgcttcgttttggtctggaagacggccatccacgt
acattggaagaagtgggaaaagaatttaatgttacccgagagcgcattagacagattgag
gcaaaggctcttagaaagttaaggaatcctgtacgcagcaagcgtattcgggacttctta
taa
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