Lacrimispora xylanolytica: OW255_15570
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Entry
OW255_15570 CDS
T08662
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lxa
Lacrimispora xylanolytica
Pathway
lxa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OW255_15570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxa03019
]
OW255_15570
03016 Transfer RNA biogenesis [BR:
lxa03016
]
OW255_15570
Enzymes [BR:
lxa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OW255_15570
Messenger RNA biogenesis [BR:
lxa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OW255_15570
Transfer RNA biogenesis [BR:
lxa03016
]
Prokaryotic type
tRNA degradation factors
OW255_15570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_Vigilin
CvfB_2nd
KH_KhpA-B
DUF1654
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
WAJ22972
UniProt:
A0ABY7A8H1
LinkDB
All DBs
Position
complement(3336291..3338429)
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AA seq
712 aa
AA seq
DB search
MYKSFSMELAGRTLTVEVGRVAKQANGAAFMHYGDTVVLATATASDKPRDGIDFFPLSVE
YEEKLYAVGKIPGGFNKREGKASENSVLTSRVIDRPMRPLFPKDYRNDVTLDNIVMSVDQ
DCSPELTAMLGSAIATSISDIPFDGPCATTQVGLVDGEFVINPTQAQKQASDMALTVASV
RDKVIMIEAGANEVAEDLMIEAIFKAHEVNKEIIKFIDTIVAECGKPKHTYTSCAVPDEL
FAAIREVVPPAEMEVAVFTDEKQVREENIKNITAKLQEAFADNEEWLSVLGEAIYQYQKK
TVRKMILKDHKRPDGRAMDQIRHLAAEVDMLPRVHGSAMFTRGQTQILNICTLAPLSESQ
RLDGIDNMETSKRYMHHYNFPSFSVGETRPSRGPGRREIGHGALAEKALVPVLPSEVEFP
YAIRTVSETMESNGSTSQASICSSSMALMAAGVPIKSAVAGISCGLVTGDSDDDYIVLTD
IQGLEDFFGDMDFKVGGTHKGITAIQMDIKIHGLTRPIIEEAIRTTREARLYILDEVMAK
AISEPRKEVGKYAPKIDQISIDPQKIGDVVGKQGKVINKIIEETGVKIDISDDGSVSVCG
TDQDMIDRAIQIIKSIVTEIEAGQIMTGKVVRIMNFGAFVELAPNKDGMIHISKLSEKRV
AKVEDVVNIGDVVTVKVVEVDKMGRINLSMKPSDMTAKAEEAKEEKEVKENE
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtacaagagttttagtatggaactggccggcagaacattaaccgttgaagtcggcaga
gtagcgaagcaggcaaatggagcggcattcatgcattacggagataccgtagtattggct
accgcaactgcttccgacaagccaagggatggaattgatttcttccctctgagcgtagaa
tatgaagaaaaactgtatgccgtaggtaagattccaggcggctttaacaaaagagaggga
aaagcctctgagaattcggttctgacatcacgtgttatcgaccgtcccatgagaccttta
ttcccaaaagattaccgtaacgacgttacgttagataacatcgtaatgtccgttgatcag
gattgcagcccagagcttaccgctatgttaggttctgccattgctacttctatttctgat
attccttttgacggtccttgcgcgaccactcaggtaggtcttgttgacggcgagttcgtc
atcaatccgactcaggctcagaagcaggcgtctgacatggctcttaccgtagcctctgta
agagacaaagtcattatgattgaagcaggagccaatgaagttgcggaagatttaatgatc
gaagctatctttaaagctcacgaagtaaacaaggaaatcattaagtttattgataccatt
gtagcagagtgcggaaaaccaaaacacacctatacaagctgtgcagttccagatgaatta
tttgctgccattcgtgaagtagttcctcctgcagagatggaagttgctgttttcaccgat
gaaaagcaggtaagagaagagaacatcaagaacattaccgcaaagcttcaggaagcattt
gcagataatgaagagtggctttctgtactgggagaggcaatttatcagtaccagaaaaag
accgttcgtaagatgatcttaaaggatcacaagcgtcctgacggccgtgctatggatcaa
atccgccatctggcagctgaagtagatatgcttccaagagttcacggttctgctatgttc
acccgtggtcaaactcagattttaaatatttgtactcttgctccattatctgaaagccag
agattagacggcatcgataatatggagacctctaagagatatatgcaccactacaatttc
ccttccttctctgtaggtgagacaagaccttccagaggtccgggacgtcgtgaaatcggt
catggtgcattagctgaaaaagcattggttcctgtacttccttcagaagtagagttccca
tatgcaatccgtaccgtttctgagaccatggaatccaacggttccacctctcaggccagc
atctgttcttcctctatggcattaatggcagcaggtgttccgatcaagtcagccgttgca
ggtatttcctgtggtctggttactggagattctgatgacgattacatcgttcttacagat
atccagggactggaagacttctttggcgatatggactttaaggtaggcggtactcataag
ggaatcacagccattcagatggatatcaagattcacggtttaacaagaccaatcatcgaa
gaggcaatccgcaccacaagagaagcaagactttatattcttgacgaagtaatggcaaag
gccatcagcgagccaagaaaagaagttggtaagtatgctcctaagattgaccagatctcc
attgatcctcagaagatcggtgatgttgttggtaagcagggtaaggttatcaataagatc
attgaagagactggcgttaaaatcgacatctctgatgacggcagcgtttctgtatgtgga
accgatcaggatatgattgaccgtgccattcagatcattaagagcatcgtaactgaaatc
gaggctggtcagatcatgacaggtaaggtagtgagaatcatgaactttggtgctttcgta
gagcttgcaccgaataaagatggtatgattcacatttccaagctgtctgagaagagagtt
gccaaggtagaagatgtggttaatatcggcgatgtagttaccgttaaggtagttgaggtt
gataagatgggaagaatcaacttaagcatgaagccaagcgatatgactgcaaaggcagaa
gaagccaaagaagagaaagaagtaaaagaaaacgaataa
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