Luteimicrobium xylanilyticum: KDY119_00810
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Entry
KDY119_00810 CDS
T06254
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lxl
Luteimicrobium xylanilyticum
Pathway
lxl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lxl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KDY119_00810 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxl03021
]
KDY119_00810 (rpoC)
03400 DNA repair and recombination proteins [BR:
lxl03400
]
KDY119_00810 (rpoC)
Enzymes [BR:
lxl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KDY119_00810 (rpoC)
Transcription machinery [BR:
lxl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KDY119_00810 (rpoC)
DNA repair and recombination proteins [BR:
lxl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KDY119_00810 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QFU97312
UniProt:
A0A5P9Q8C4
LinkDB
All DBs
Position
944753..948622
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDDEGRQEDLPNLQNEIDLERKEIENRRDNDINTRATKLEAD
LAELEAEGAKADARRKVRDSAEREMAQIRKRSDAELDRLDQVWDRFKNLKVADLEGDELL
YRQLQDRYGSYFEGSMGAAAIQKRLENFDLDAEAEALREIIRTGKGQRKTRALKRLKVVN
AFLTTTNSPTAMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILKPSDGRPVTMPSQDMIIGLFHLTNDHAGAEGEGR
AFSSVAEAIMAFDQGTLDLNAEIKLRIPDLVLDPATAPEGYVAGEPFLFTTTLGRAIFND
TLPVDYPYVNEIVDKKRLSTIVNELAERYPKVDVAASLDALKEAGFRWATRSGVTIAISD
VATPEAKPAILAEHEERALKVQQQYDKGLITDDERRQELIEIWTQATDKVATAMRESFPE
RNTVFTMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPLPVAEKIGDTLVRHPKV
ETSVYARSLASDVEDADGNVVAHAGEDVGDVLIERLLEAGVTEVKVRSVLTCESRVGTCA
KCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPRVTEL
FEARTPKGESPIAEFSGRVAIDDTERTRRIVLTPDDGSEEIAYAVSKRSRLLVNDGDHVE
VGTQLVQGAVDPKKVLRILGPRATQKHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRRVT
VLDSGDSQLLPGELAERARFEDANRRAVAEGGQPASGRPELMGITKASLATDSWLSAASF
QETTRVLTEASMSGRRDPLLGLKENVILGKLIPAGTGLPRYRDVDVEPTEQARAELFPTF
GYDEIDFSPLGMGTGEAIPLDDIDFGDFR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgcatcggcctggccacggccgacgacatc
cgtgcctggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacgcgctcgaaggtccgccgtgagcgcatgggccacatcgagctcgccgcgccc
gtcacgcacatctggttcttcaagggtgtgccgagccgcctcggctacctgctggacctc
gccccgaaggacctggagaaggtcatctacttcgcggcctacatgatcacgtgggtcgac
gacgagggtcgccaggaagacctcccgaacctccagaacgagatcgacctggagcgcaag
gagatcgagaaccggcgcgacaacgacatcaacacgcgtgccacgaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggccgacgcgcgccgcaaggtccgcgactcg
gccgagcgcgagatggcgcagatccgcaagcgttccgacgcggagctcgaccgcctcgac
caggtctgggaccggttcaagaacctcaaggtcgccgacctcgagggcgacgagctgctc
taccgccagctccaggaccgctacgggagctacttcgagggctcgatgggcgccgcggcg
atccagaagcgcctcgagaacttcgacctggacgccgaggccgaggcgctgcgcgagatc
atccgcaccggcaagggccagcgcaagacccgtgccctcaagcgcctcaaggtcgtcaac
gcgttcctcacgaccaccaactcgcccacggcgatggtgctcgacgccgtcccggtgatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacgtcggacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcgcctgctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtggactcg
ctcttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tcgatctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgccgaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtggacctcaaccacgcgcagaacatcaagtccgcgaagcgcatggtcgagcgggcccgc
ccggtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaaccgc
gcgcccaccctgcaccgtctgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gccatccacctgcacccgctcgtgtgcgccgcgttcaacgcggacttcgacggcgaccag
atggcggtccacctgcccctgtcggcggaggcgcaggccgaggcccgcgtgctcatgctg
tcgagcaacaacatcctgaagccgtcggacggtcgtccggtgaccatgccctcgcaggac
atgatcatcggtctgttccacctgacgaacgaccacgcgggcgccgagggcgagggccgc
gcgttcagctcggtcgccgaggcgatcatggcgttcgaccagggcacgctcgacctgaac
gccgagatcaagctgcggatcccggacctggtcctggacccggcgacggcacccgagggc
tacgtcgccggcgagccgttcctgttcacgacgacgctcggccgcgcgatcttcaacgac
acgctgccggtcgactacccgtacgtgaacgagatcgtggacaagaagcgtctgtcgacg
atcgtgaacgagctggcggagcgctaccccaaggtggacgtcgccgcgtcgctcgacgcg
ctcaaggaggccggtttccgctgggccacccgttcgggtgtcaccatcgcgatctccgac
gtcgcgacgccggaggccaagccggcgatcctcgccgagcacgaggagcgtgcgctcaag
gtccagcagcagtacgacaagggtctgatcaccgacgacgagcgccgtcaggagctcatc
gagatctggacccaggccaccgacaaggtcgcgacggcgatgcgggagtccttcccggag
cgcaacacggtcttcacgatggtcggctcgggtgcgcgtggtaactggatgcaggtccgt
cagatcgccggtatgcgtggtctcgtggcgaacccgaagggcgagatcatcccgcgcccg
atcaagtccaactaccgcgagggtctgtccgtcctcgagtacttcatcgcgacccacggc
gcccgcaagggtctcgcggacaccgcgctgcgtaccgcggactccggctacctcacgcgt
cgtctcgtcgacgtgtcgcaggacgtcatcatccgtgaggacgactgcggcaccgagcgc
gggctcccgctgccggtggccgagaagatcggcgacaccctggtccgccaccccaaggtg
gagaccagcgtgtacgcgcgcagcctcgcctcggacgtcgaggacgccgacggcaacgtc
gtcgcccacgcgggcgaggacgtcggcgacgtgctcatcgagcgcctcctcgaggccggg
gtcacggaggtcaaggtccgttcggtcctgacctgcgagtcccgcgtcggcacgtgcgcg
aagtgctacggccgttcgctcgcgaccggcaagctcgtcgacatcggcgaggccgtcggc
atcatcgcggcccagtcgatcggtgagcccggcacgcagttgacgatgcgtacgttccac
acgggtggtgtcgcctccgcggaggacatcacgcagggtctgccgcgtgtcaccgagctc
ttcgaggcccggaccccgaagggcgagagccccatcgcggagttctcgggtcgcgtcgcg
atcgacgacaccgagcgcactcgccggatcgtgctcacgcccgacgacggctccgaggag
atcgcctacgccgtcagcaagcgctcgcgcctgctggtgaacgacggcgaccacgtcgag
gtcggcacccagctcgtccagggcgccgtcgacccgaagaaggtgctgcgcatcctcggc
ccgcgtgccacgcagaagcacctggtcgacgaggtgcaggaggtctaccgctcccagggc
gtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgtcgcgtgacc
gtgctcgactcgggcgactcgcagctccttcccggcgagctcgccgagcgtgcccggttc
gaggacgcgaaccgtcgtgcggtcgccgagggcggtcagccggcctcgggtcgtccggag
ctcatgggcatcacgaaggcgtcgctcgcgaccgactcgtggctgtccgcggcctccttc
caggagaccacgcgcgtgctcacggaggcgtccatgagcggtcgtcgtgacccgctgctg
ggcctcaaggagaacgtcatcctcggtaagctcatccccgccggcacgggtctcccgcgc
taccgcgacgtggacgtcgagccgaccgagcaggcgcgcgccgagctgttcccgacgttc
gggtacgacgagatcgacttctcgccgctcggcatgggcacgggcgaggcgatcccgctc
gacgacatcgacttcggcgacttccgctga
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