Luteimicrobium xylanilyticum: KDY119_02515
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Entry
KDY119_02515 CDS
T06254
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lxl
Luteimicrobium xylanilyticum
Pathway
lxl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KDY119_02515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxl03021
]
KDY119_02515
03019 Messenger RNA biogenesis [BR:
lxl03019
]
KDY119_02515
Transcription machinery [BR:
lxl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KDY119_02515
Messenger RNA biogenesis [BR:
lxl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KDY119_02515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
ResIII
NACHT
Motif
Other DBs
NCBI-ProteinID:
QFU98990
UniProt:
A0A5P9QD05
LinkDB
All DBs
Position
complement(2813352..2815340)
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AA seq
662 aa
AA seq
DB search
MTDTTARSGSLSALRLPELQALATELGVKGTSKMRKSDLVDAISSARSGAPARTEDAPAR
RTRRAATTEQTSEEVERAPRERRSAPASGTDKARVAVAAALTETASRPVEARLAEGESSD
DRAARAAAAASGVTGERRSRRSGRDAGAPRNVDTSDLLDTLPVKRDGAERRDDASTGQSE
RRDSRDGDGSQRQRDRQGSGQGGEKRQQGGNAGQGQGSNQGGGNAQDDERPGRRRRARER
NRDRNKRGRNNRGGAPADLASLDDVEIAEDDVLLPVAGVLDILDNYAFVRTSGYLPGPND
VYVSLGQVKKSGLRRGDAVTGAVRQPRDGEQQGGGSNRQKFNALVRLDTVNGQSPEEARQ
RAEFSKLTPLYPQERLRLENPENTRLTPRVIDIVAPIGKGQRGLIVAPPKAGKTIIMQQI
ANAITTNNPEVHLMVVLVDERPEEVTDMERTVKGEVIASTFDRPASDHTIVAELAIERAK
RLVELGQDVVVLLDSITRLSRAYNLAAPASGRILSGGVDAAALYPPKKFFGAARNIENGG
SLTILGSALVETGSKMDEIIFEEFKGTGNMELRLSRSLADKRIFPAVDVNGSGTRREEIL
MPRDELQIVYKLRRVLGALDQQQAIELLLGKLKDTKSNVEFLLQVQKTTPGALGDENAGR
TI
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
gtgactgacaccaccgcccgatccggttcgctgtccgcgctccgcctgcccgagctgcag
gcgctcgcgaccgagctcggcgtcaagggcacctccaagatgcgcaagagcgacctcgtc
gacgcgatctcgtcggcgcgctccggcgcccccgcgcggacggaggacgcgcccgcgcgt
cgcacccgccgcgcggccaccaccgagcagacttccgaggaggtcgagcgcgcgccgcgt
gagcgtcgcagcgcgccggcctccggcaccgacaaggcgcgcgtggccgttgcggccgcg
ctcaccgagaccgcgagccgaccggtcgaggcgcgcctcgccgagggcgagagcagcgac
gaccgcgcggcccgtgccgccgcggcggcgtccggcgtgaccggcgagcgtcgttcgcgc
cgctccggtcgcgacgcgggcgccccgcgcaacgtcgacaccagcgacctgctggacacg
ctgcccgtgaagcgggacggcgcggagcgccgcgacgacgcgagcaccggccagtccgag
cgtcgcgactcgcgcgacggcgacggctcgcagcgccagcgcgaccgccagggctccggc
cagggcggcgagaagcgccagcagggcggcaacgccggccagggccagggctccaaccag
ggcggcggcaacgcgcaggacgacgagcggcccgggcgccgtcgtcgggcgcgcgaacgc
aaccgcgaccgcaacaagcgcggccgcaacaaccgtggcggcgcgccggccgacctcgcc
agcctcgacgacgtcgagatcgccgaggacgacgtcctgcttcccgtcgcgggcgtgctc
gacatcctcgacaactacgcgttcgtgcgcacgagcggctacctcccgggtccgaacgac
gtctacgtgtcgctcggccaggtcaagaagtccgggctgcgccgcggtgacgcggtcacc
ggcgcggtgcgccagccgcgcgacggcgagcagcagggcggtggctcgaaccgccagaag
ttcaacgccctcgtgcgcctcgacacggtcaacggccagtcgcccgaggaggctcgccag
cgcgccgagttctccaagctgacgccgctgtacccgcaggagcgcctgcgcctcgagaac
ccggagaacacgcgcctcacgccgcgcgtcatcgacatcgtcgcgcccatcggcaagggc
cagcgcggcctcatcgtcgcgccccccaaggccggcaagacgatcatcatgcagcagatc
gccaacgcgatcacgaccaacaaccctgaggtccacctcatggtcgtgctggtcgacgag
cggcccgaagaggtcaccgacatggagcggacggtcaagggcgaggtcatcgcctcgacg
ttcgaccgccccgcgtccgaccacacgatcgtcgcggagctcgccatcgagcgtgccaag
cgcctcgtcgagctcggccaggacgtcgtcgtgctgctcgactccatcacccgtctgtcg
cgcgcctacaacctggccgcgccggcgtcgggccgcatcctgtcgggtggtgtggacgcc
gcggcgctctacccgcccaagaagttcttcggtgcggcgcgcaacatcgagaacggcggc
tcgctgacgatcctcggctccgcgctcgtcgagaccggctcgaagatggacgagatcatc
ttcgaggagttcaagggcaccgggaacatggagctccggctctcccggtcgctcgcggac
aagcggatcttcccggccgtcgacgtcaacggctcgggcacgcggcgcgaggagatcctc
atgccgcgcgacgagctgcagatcgtctacaagctgcgccgcgtgctcggcgcgctcgac
cagcagcaggccatcgagctcctcctcggcaagctcaaggacaccaagtccaacgtggag
ttcctgctccaggtgcagaagacgacgccgggcgcgctcggcgacgagaacgccggacgc
accatctga
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