Lactobacillus xylocopicola: KIM322_05140
Help
Entry
KIM322_05140 CDS
T09734
Symbol
uvrA
Name
(GenBank) UvrABC system protein A
KO
K03701
excinuclease ABC subunit A
Organism
lxo
Lactobacillus xylocopicola
Pathway
lxo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KIM322_05140 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lxo03400
]
KIM322_05140 (uvrA)
DNA repair and recombination proteins [BR:
lxo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KIM322_05140 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KIM322_05140 (uvrA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
AAA_21
RsgA_GTPase
AAA_23
AAA_29
nSTAND1
nSTAND3
DnaJ_CXXCXGXG
AAA_22
AAA_15
AAA_33
nSTAND_NTPase5
AAA_18
APS_kinase
SLFN-g3_helicase
NACHT
RNA_helicase
Mtrc-MtrF_II-IV_dom
Viral_helicase1
cobW
MMR_HSR1
DUF87
T2SSE
Aq_aa27
NTPase_1
Septin
Ten1
Motif
Other DBs
NCBI-ProteinID:
BDR60253
UniProt:
A0ABM8BG65
LinkDB
All DBs
Position
538526..541378
Genome browser
AA seq
950 aa
AA seq
DB search
MVNDQIVIRGAREHNLKDIDLEIPKDKLVVITGLSGSGKSSLAFDTLYAEGRRRYVQSLS
SYARQFLGQMDKPDVDSIDGLNPAISIDQKTTSHNPRSTVGTVTEINDYLRLLWARVGQP
ICPNDGTVIERQSVEQMVDRILALPERSKIQLLAPVIRAKRGGHKEVFQRVQRAGYVRVI
VDGEMHEIGDDFNLDKNKRHSIDIVVDRLVVKEGIRSRLFDSVEATLRLSDGYMNVDVIG
SDLLNFSEYYACPKCGFTVGEMEPRLFSFNAPFGACPDCDGLGVKLAVDEDLVIPDQDKT
LADGAVAPWKNSKYYSEMLEQACAVLKIPLDQPFAQLTAKQQTMILHGSTKKIKFHVTGD
FGVNDTTAPFEGAMENVERRYLHPMSKFMRDVMGKYMTELTCPTCHGKRLNRKALAVKVM
DKDIAEASELAINRALDFFKEIELDEQKTIVAKPILKEVCDRLSFLNSVGLDYLTLSRTA
NTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIAALKRMRDLGNSLIVV
EHDDETMRQADYLVDMGPGAGTYGGQVMDAGTPQEVEERAKSLTGQYLAGQKFVPVPAER
RRGNGKKITITGAIENNLKQLKVDFPLGKLVVVTGVSGSGKSTLVNIILKRVLAQKLNRN
QTKPGKYKSITGYKNIEKIIDIDQSPIGRTPRSNPATYTSVFDDIRALFAQTNEAKLRGY
TKARFSFNVKGGRCEACHGDGIIKIEMNFLPDVYVPCEVCHGSRYNSETMEVTYRKKNIA
QVLDMTISEACEFFQKIPKIARKLQTIVDVGLGYVKLGQSATTLSGGEAQRMKLAAELQK
LSTGKNFYILDEPTTGLHTDDIKRLLEVLQRLVDQGNTVLVIEHNLDVIKSADWLIDLGP
EGGEAGGQIVATGTPEQVSEVKESYTGRYLKPVLMRDTALTKQATKKMTK
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatgatcaaattgttattcgtggtgcccgcgaacataacttaaaggatatcgac
cttgagattccgaaggataagctggttgttattaccggtttgtccggttcaggtaaaagc
tcactagcctttgacacactttatgcggaaggtcgcagacgttatgtccaatcgctttct
agctatgcccggcagtttttgggtcaaatggataaaccagacgttgattcaattgacggt
ttgaacccggcaatttcaattgatcaaaaaacgacctcgcacaatccgcgttcaaccgtc
ggcacggtaacggaaattaatgattacttgcggctcttgtgggcacgggtgggacagcca
atctgccctaacgatggtaccgtgattgaacggcagtccgttgaacaaatggtggaccga
attttagccttaccggaacgcagtaagattcagttgcttgccccggttattagagctaag
cgcggtggtcataaggaagtctttcagcgggttcagcgggcaggttacgtccgtgttatt
gttgatggtgaaatgcatgaaattggtgatgactttaacttggataagaacaagcgccat
agcattgacatcgttgttgaccgtttggtcgtaaaagagggcattcgctcgcgactcttt
gattcagttgaggccacgctgcgcttgtccgatggctacatgaatgttgatgtaattgga
agcgacttgctgaacttttcagaatactatgcttgtcctaagtgtggctttaccgtgggg
gagatggaaccgcggctcttttctttcaatgcgccttttggtgcctgccctgactgtgat
ggactaggagttaagttagcagttgatgaggacttggttattccagatcaggacaagaca
ctggctgacggtgcagtggctccttggaaaaattctaaatattacagtgagatgttagaa
caggcctgcgcggtgcttaagattccgctcgatcagccctttgcccagttaacagctaaa
cagcaaacaatgatcctgcatgggtcgaccaaaaaaatcaagtttcacgttaccggtgat
tttggggttaatgatacaactgctccttttgaaggtgcaatggaaaacgtggagcgccgc
tatctgcacccaatgtctaagtttatgcgggatgtgatggggaagtatatgacggagtta
acctgtcctacttgtcatggcaagcggttgaaccgtaaagcgctggctgttaaggtgatg
gataaggatattgccgaggcatcagagcttgcaatcaaccgggcccttgactttttcaag
gaaattgaactcgatgagcaaaaaacaattgttgctaaaccgatcttaaaagaagtttgt
gatcggttgtctttcctgaatagcgtggggctggactacctaaccttatcgcgaacagca
aataccttgtcgggcggtgaggcgcagcggattcggctggctacccagattggttctaac
ttgtcgggtgtcatgtatgttcttgatgagccgtcaatcggtctgcaccaacgcgataac
gatcgcttgattgcggcactgaaacggatgcgtgatttaggtaattcgctaattgtggtt
gagcatgatgacgaaacaatgcggcaggctgattacttggttgatatgggacctggtgcg
ggtacttatggtggccaagtgatggatgctgggacaccgcaagaggttgaggaacgggcc
aagtcgctgacgggccaatatttagctggccaaaagtttgtccctgtgccggctgaacgc
cgccgcggcaatggcaagaaaatcacgatcactggtgctattgagaacaacttgaagcag
ctcaaagtggattttccactaggtaagttggtggtcgtgactggtgtttcgggctcaggc
aagtcaacgctggttaacatcattttgaagcgagtgctggcccaaaagctaaaccggaat
cagactaaaccgggaaaatataaaagtattacgggctataaaaatattgaaaaaatcatt
gatattgatcagagtccaattgggcggacaccgcgcagtaacccggccacctataccagc
gttttcgatgatattcgggcactgtttgcacagactaacgaggccaagttgcgaggttat
accaaggcacgcttttcttttaacgttaaggggggccgctgcgaagcttgtcacggcgac
ggcattatcaagattgaaatgaacttcttgccggatgtctatgtgccgtgtgaggtttgt
catggtagtcggtacaactcggaaacaatggaagtgacctatcgcaagaaaaacattgcc
caggtgcttgatatgacgattagcgaagcgtgtgaattcttccaaaagattcccaaaatt
gcccgcaaattgcagacgattgtcgatgtcggcttaggctacgttaaactggggcaatcg
gcaacgaccctgtctggtggtgaagcccaaaggatgaaattagctgcagaactgcagaaa
ttgtcaactggtaagaatttttatattctggatgaaccaacaacgggtcttcatacggac
gacatcaagcgtctccttgaggtgctacagcgtctggttgaccaaggcaacacggtccta
gtaattgagcataatcttgacgttattaaaagtgcagattggctgattgatctgggacct
gagggcggtgaagcaggcggccaaattgttgccaccgggacaccggagcaggtaagtgaa
gttaaggagagttatactggtcgttatcttaaacccgtattaatgcgagatacggcatta
actaagcaggctactaaaaaaatgaccaaatag
DBGET
integrated database retrieval system
