Lactobacillus xylocopicola: KIM322_08830
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Entry
KIM322_08830 CDS
T09734
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lxo
Lactobacillus xylocopicola
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lxo03016
]
KIM322_08830 (truB)
Enzymes [BR:
lxo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
KIM322_08830 (truB)
Transfer RNA biogenesis [BR:
lxo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
KIM322_08830 (truB)
Prokaryotic type
KIM322_08830 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
BDR60622
LinkDB
All DBs
Position
complement(925985..926875)
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AA seq
296 aa
AA seq
DB search
MNGILVIDKDKGMTSSDVVCQLRKILHTKKIGHAGTLDPDVTGVLPIAVGQATKLIELMH
TKGKEYEGTGILGFATDSYDVSGTVLNEKKITSAVSADELKKAMQKFVGTIEQVPPIYSA
VRVKGKHLYEYARAGIEVERPRRQVTVSAYDLVGAPTFDEQRGQVTFNFKIACSKGTYVR
SLVNDLGTALGVPAVMKSLRRTASSGFDLSQAVKLDFIAANPAQAPDFLQPLDLFFKDYQ
QVELSASQWLKVNNGAAITLKTNAKKVVLRYNGRVKAIYQKDDYNYRPELMLLQNN
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaattttagtaattgataaggataagggcatgaccagtagtgatgtggtctgc
cagttacggaaaatattgcataccaaaaagattggccatgcaggaaccttagaccctgat
gtaaccggtgttttgccaattgcagtgggccaggccaccaagttgattgagttaatgcat
accaaaggcaaagaatatgaaggaactggcatcttaggctttgcgaccgactcgtatgac
gtcagcggaacagtcttaaacgaaaaaaagataaccagtgcagtgtccgctgatgaactt
aaaaaggccatgcaaaaatttgtgggtacgattgaacaagtgccgccaatttattctgca
gttcgggttaagggcaaacacctgtatgaatatgcgcgggcgggcattgaggtagagcga
ccccgtagacaagtaacggtttcagcgtatgacttagttggcgcgccaacctttgatgag
cagcgcggccaagtcacttttaactttaaaattgcctgcagtaagggtacctatgtgcgc
tcactggtcaatgatttgggaacggcactgggcgttccggcagtgatgaaaagtttgcgc
cgcacggctagctcaggctttgacctcagtcaggctgttaaacttgatttcatagctgcc
aatccagcacaggccccagactttctccaaccccttgaccttttttttaaggattaccag
caggttgaacttagtgccagtcagtggcttaaagtcaacaatggggcggccattacacta
aaaacgaatgcaaaaaaggtggtcttacggtacaatggtagggttaaggcaatttatcaa
aaagatgattataactaccgtcctgaattaatgcttttacaaaataattag
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