Lactobacillus xylocopicola: KIM322_10500
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Entry
KIM322_10500 CDS
T09734
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lxo
Lactobacillus xylocopicola
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxo03019
]
KIM322_10500
03009 Ribosome biogenesis [BR:
lxo03009
]
KIM322_10500
Enzymes [BR:
lxo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KIM322_10500
Messenger RNA biogenesis [BR:
lxo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KIM322_10500
Ribosome biogenesis [BR:
lxo03009
]
Prokaryotic type
rRNA helicases
KIM322_10500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
GlnE
Motif
Other DBs
NCBI-ProteinID:
BDR60789
UniProt:
A0ABM8BHN1
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All DBs
Position
complement(1110520..1111881)
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AA seq
453 aa
AA seq
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MSNIFQDEQLKPAVRSGLTKINFSTPTPVQERVIPVLLAGQNTVVQAVTGSGKTHSFLIP
VLNELDEGLEYPQAILTAPSRELSEQLYQVARQLRDATGLNISIAHFAGGSDRDRQLKKL
ANHKPQVVIATPGRLHDFVEKKLLPLDEVKSFVIDEADMTLDMGFLSDIDFIAQRMPRST
TFAAFSATIPVKLSNFLRKYMSKPEQIVIDNPAVISPTIKNDLIDVGAKKRKRVLYQLLT
MGQPYLALVFANTKQTVDELTRFLQDEGLRVAKIHGGITERERKRTLREVKADQYQYVVA
TDLAARGLDIDGVSLVVNYELPRDLEFVVHRIGRTGRNGMSGHAVTLIREDEMKSIAGLE
KMGIHFDFVEIKNEELVPRKHYRSRRDRSATVHDVDTKVKGYVKKVKNKRKPGYKKKIKQ
VIQRDRAQKRKLEQRHQLRKAMRQRKARHDSQA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatatttttcaagatgaacagctcaaacctgccgttaggtcgggcctgaccaag
attaacttcagtaccccaacgccggttcaggaaagagtgattccggttttactggcgggt
cagaatacagtagtccaagctgttactgggtcgggcaagactcactcctttttaattccg
gtgctgaatgagctcgatgaaggtttggagtacccgcaggccatcttaactgctcctagt
cgtgaattatcagaacaactctatcaggttgcccggcaattgcgtgatgcgacgggactc
aatatttcaattgcacactttgcggggggcagtgaccgtgaccgccagctgaagaaacta
gctaatcacaaaccgcaagtggttattgcaacaccggggcgtttacatgattttgtggaa
aagaaactactaccccttgatgaggtaaaaagtttcgtcattgatgaggccgatatgact
ttagatatgggctttttgagcgatatcgacttcattgcccagagaatgcctagaagtact
acctttgctgcattttcggcgaccattccagttaagttaagcaattttttgcgtaagtac
atgtccaagccagagcagattgttatcgataatccggctgtaatttcgccaactataaaa
aatgacctaattgacgttggtgcgaagaagcgcaagcgggttttataccaactattaacg
atggggcagccctacttggctttggtttttgctaataccaaacaaacggttgatgagtta
acacgtttcttacaggacgaaggcttacgcgttgctaagattcatggcgggattaccgag
cgtgaacgtaagcgcaccctgcgcgaggttaaggctgatcagtaccagtacgttgtagct
acagacctggccgcccgcggccttgatattgatggtgttagtttagtagtcaattatgag
cttccgcgtgatctggaatttgtggtgcaccgtattgggcggactgggcgcaatgggatg
tctggtcatgccgtgactttaattcgtgaagatgaaatgaagagtattgcgggcttggaa
aagatggggattcactttgattttgtggaaatcaaaaatgaggaattagttccgcgtaaa
cactaccgcagtcgccgtgaccgtagtgcaactgttcatgatgttgacactaaggtaaaa
ggctatgtaaaaaaggtcaaaaataagcgcaaacctggctataagaaaaaaatcaaacag
gtgattcagcgtgatcgggcccagaaacgtaagcttgagcagcgtcatcagcttagaaag
gcaatgcgtcagcgtaaggcacgccatgatagccaagcataa
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