Lactobacillus xylocopicola: KIM322_11420
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Entry
KIM322_11420 CDS
T09734
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lxo
Lactobacillus xylocopicola
Pathway
lxo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIM322_11420 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxo03021
]
KIM322_11420 (rpoA)
03400 DNA repair and recombination proteins [BR:
lxo03400
]
KIM322_11420 (rpoA)
Enzymes [BR:
lxo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIM322_11420 (rpoA)
Transcription machinery [BR:
lxo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIM322_11420 (rpoA)
DNA repair and recombination proteins [BR:
lxo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIM322_11420 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
DUF961
Prefoldin_2
Motif
Other DBs
NCBI-ProteinID:
BDR60881
LinkDB
All DBs
Position
complement(1242720..1243658)
Genome browser
AA seq
312 aa
AA seq
DB search
MIEFEKPNITVVDQEKSYGKFVIEPLERGFGTTLGNSLRRVLLTSIPGTGLVYVQIDDVL
HEFSTVPGVREDVAKMILNLKKLELKSFSDEQKTIEVDVEGPATVTADDLKADADIQVLN
PDQYICTIADGGHLHMQIAVKNGRGYVAAGDNKSEDMPIGVIPVDSLFSPIKKVNYQVES
TRVGKRDDFDKLTLEIWTDGSIKPNDALSFAAKILVEHFKVFETADANAKFSDVMVEKED
DTAEKKLEMTIEELDLSVRSYNCLKRAGINTLQELTDKTEADMMRVRNLGRKSLEEVKNK
LADLGLSLRQED
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatttgaaaaaccaaatattaccgtagtagaccaagaaaagtcttatggtaaa
tttgttattgaaccacttgaacgaggctttggtactactttaggtaattcattacgtaga
gttttacttacatctatcccaggcacaggactcgtctatgttcagattgatgatgttttg
cacgaattttcaaccgttccaggcgtgagagaagacgtcgccaagatgatcttaaacttg
aaaaagcttgaattaaagtctttttcagatgaacaaaagacgattgaagttgatgtggaa
ggcccggcgactgttacagccgatgaccttaaagcagatgccgatattcaggttttgaac
cccgaccaatatatatgtactattgctgacggcggccacttgcacatgcagattgcggtt
aagaacggccgtggttatgttgctgcgggtgacaacaagagtgaggatatgccgattggt
gttattccggtcgattcacttttttcaccgatcaaaaaggtgaattatcaagttgagtca
actcgtgttggtaaaagagacgactttgacaaactcactttagagatttggacagatggt
tcaatcaaacctaatgacgcccttagttttgctgctaaaattttggtagagcacttcaaa
gtgtttgaaactgctgatgcaaatgccaagttcagtgatgtgatggttgaaaaagaagac
gatacagccgagaagaagctcgaaatgacgattgaagagcttgatttgtctgttcgttca
tacaactgcctcaaacgggctggcattaatactttgcaggagttaactgataagactgaa
gctgatatgatgcgggtacgtaacttgggccgaaaatcattagaagaagttaagaacaaa
ttagctgacttgggactttcacttcgtcaagaagattaa
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