Lactobacillus xylocopicola: KIM322_11750
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Entry
KIM322_11750 CDS
T09734
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lxo
Lactobacillus xylocopicola
Pathway
lxo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KIM322_11750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxo03021
]
KIM322_11750 (rpoC)
03400 DNA repair and recombination proteins [BR:
lxo03400
]
KIM322_11750 (rpoC)
Enzymes [BR:
lxo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KIM322_11750 (rpoC)
Transcription machinery [BR:
lxo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KIM322_11750 (rpoC)
DNA repair and recombination proteins [BR:
lxo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KIM322_11750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDR60914
UniProt:
A0ABM8BHY7
LinkDB
All DBs
Position
complement(1261557..1265222)
Genome browser
AA seq
1221 aa
AA seq
DB search
MIDVNKFESMQIGLASPNKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWAC
ACGKYKGVRYRGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
SPRLLEEVIYFAAYIVIDPGDTELEFKQLLTEVEYREQKEKYGNRFDAKMGAEAIRDLLR
KVDLGKEVKDLRKELETATGQKRTRAIRRLDILDAFNNSGNKPEWMVIDAVPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRSVVGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVSPKLKFYQCGVPRP
MALELFKPFVMHELVKRKLASNIKSAKRKIDREDDDVWDVLESVIKERTVLLNRAPTLHR
LSIQAFEPVLVPGKSIRLHPLTCEAYNADFDGDQMAIHVPLSDEAVAESRLLMLAAHHIL
APKDGKPIVTPSQDIVLGNYWLTQAEKGREGEGMMFNSPDEATVAYNNGDIHYHSIIGMA
ADSMPQKAWPKGYEHGIFITTYGRIIFNQIFPEDYFYVNEPTEENLNNPLAAKYFLEPGE
DIRQKIDDVANELVSTPFKKSFLSDSIATIYKYYRVQRTSEYLDDLKTLGYISSTTSGIT
IGMTDVPEIDDKDEKVDKAHKQVDVVSKQFRRGLITEEERHDRVISIWNECKDEVQDEIA
QIYDPRNPITIMADSGARGNISNFTQLAGMRGLMATPNGGLFEIPVTSNFKEGLSVLELF
MSTHGARKGMTDTALKTAQSGYLTRRLVDVAQDVIIREDDCGTDRGIDVHAIMEGDELIE
PLYDRLLGRFTAETVKDPQTGEAIVKPNVMMDENLSHQICDAGVTNVKIRSILTCDTSHG
VCRKCYGMNLATGEEVEVGEAVGTVAAQSIGEPGTQLTLRTFHNGGVAGAEDITQGLPRV
QELFEARNPKGRAIISEVDGTIDAIQENPAEHTREITVKGRIDTRSYSIPYTASVAVAEG
DEVQRGDKLTLGSIDPKELIQVTDTLTTEEYILVEVQKAYRMQGVDISDKHVEVLTRQML
QKVRVLDPGETTLLPGEIMDVGQFKERNTAVIISGGIPATAQSVILGITKAALETNSFLS
AASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIPAGTGLPVYRDMEPESDTKKPESV
YSIADIEKEMKETDEAEEPQA
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
ttgattgacgtaaacaaatttgaaagcatgcaaattggtcttgcttccccgaataagatt
cggagttggtcgtatggtgaagtcaaaaagccagagacgattaattatcggaccctaaag
cctgaaaaagacggcttattcgatgaaagaatctttgggccaactaaagactgggcttgt
gcatgtggtaagtataagggtgtaagataccgcgggatcgtttgtgatcgttgtggagtc
gaagttacctcctctaaagttagaagagaacggatgggccatattgagttggcggcgccc
gttacccatatctggtactttaaaggtattccgtcacggatgggcctaattctagatatg
tcaccaagattacttgaagaagtaatttactttgctgcctacattgtgattgatcccggt
gatactgagcttgaatttaagcaattattgactgaagtcgagtaccgtgaacaaaaggaa
aagtacggcaatcgatttgacgccaagatgggtgcagaagcaattcgcgacctgctgcgc
aaggttgacttgggcaaggaagtcaaggacttaagaaaagaacttgaaactgctactggt
caaaagcgaacacgcgcaattagacggctcgatattttggatgcctttaataattccgga
aataagcccgagtggatggtcatcgacgccgttcctgtaatcccgcccgacttgcggccg
atggttcagttagaaggtggtcgttttgctacttctgacttaaacgacttataccggcgc
gtgatcaatcgtaacaaccgactgaagcgtttgcttgacttgaatgcaccgaacattatt
gtccaaaatgagaagcggatgttgcaggaagcagttgacgctttaatcgacaacgggcgg
cgcggtcgttcggtggtggggcctggtaatcgtccgttgaagtccctttcacatatgctg
aagggtaagcaagggcgcttccgccaaaacttacttggtaagcgggttgactactctggt
cgttcagttattgatgtttcacccaaattaaagttctaccaatgtggtgttccgcgtccg
atggcacttgaattgttcaagccatttgtgatgcacgaattagttaagcgcaagctagct
tcgaacattaagagtgccaagcgcaaaattgatcgagaagatgacgatgtctgggatgta
ctggaaagtgtcattaaggagagaaccgtcttgctcaaccgtgcacctaccttgcaccgg
ttaagtatccaagcctttgagccagttttagttcctggtaagtcgatccgcctccatccc
ctgacttgtgaagcttacaatgctgacttcgatggtgaccagatggcgattcatgttcct
ttatctgatgaagctgttgccgaatcacggctcttgatgctagccgctcaccatattttg
gcacctaaggacggtaagccaatcgtcacaccatctcaggatattgtgttgggtaactac
tggttaacccaagccgaaaagggtcgtgaaggcgagggcatgatgttcaattctcccgat
gaagcgactgttgcctacaataatggtgatattcactatcactcaattattggtatggct
gctgattcaatgccgcaaaaagcatggcctaagggttatgaacacggcatctttatcact
acttatggccgcataatcttcaatcaaattttcccagaagactacttctacgttaatgag
ccaactgaagaaaatctgaataatccgcttgctgctaaatactttttggaaccgggtgaa
gatatccgtcaaaagatcgatgacgtcgcgaacgaattggtttcaactccgttcaagaag
tcattcttatcggattctatagccactatttacaaatattaccgggtccaaagaacttcg
gaatacttggacgatttgaagactttaggctacatcagttcaactacttcaggtattact
atcggaatgactgatgttcctgaaattgatgacaaggacgaaaaggtagacaaggcccac
aagcaggttgatgttgtttctaagcagtttagacgcggattaattactgaagaagagcgt
cacgatcgggtaattagtatctggaatgagtgtaaggatgaggttcaagatgagattgcg
cagatctacgatccacgtaacccaatcactatcatggccgactctggtgctcgtggtaac
atttctaactttacgcaattagccggaatgcgtggcttgatggctactccgaacggtgga
ctgtttgaaatcccggttacttcaaacttcaaagaaggactttccgttctagaactgttc
atgtccacccacggcgcccgtaaggggatgaccgatacggcgctaaagacggcccagtca
ggttacttgacgcggcgattagttgatgttgcccaggacgtaattattcgcgaagatgat
tgtgggacagaccgtggcattgacgttcatgcaattatggaaggcgacgagttaattgag
cccctctatgaccgtttacttggtcgtttcacggctgagaccgttaaggatccgcagact
ggtgaagcaattgttaagccgaatgtcatgatggatgaaaacttgtcgcatcaaatttgt
gatgctggtgtaactaatgtcaaaatcaggtcaattttgacttgtgacacctctcatggt
gtttgtcgcaagtgttacggcatgaatttagccactggtgaagaggtagaagttggggaa
gcagttggtactgtagctgcccaatcaattggtgaaccaggaacccaacttactctgcgt
actttccacaacggtggtgttgccggtgccgaagatattactcaaggtcttccgcgtgtg
caagagctgtttgaagcccgtaatccaaagggtcgcgcaattatttccgaggttgatggg
acaattgatgcaattcaagaaaatccggctgagcatacacgtgaaattaccgttaagggt
aggatcgacactagaagctacagtattccttatactgcttcagtggcggttgctgaaggt
gatgaggtgcagcgcggtgacaagctgacgcttggttcaattgatcctaaagaattaatc
caggttactgatacactaacaaccgaagagtatatcctggttgaagtgcagaaggcatac
cggatgcaaggtgtggacatttctgacaagcacgtcgaggttttgaccagacagatgctg
cagaaggtccgtgtacttgatccaggggagaccaccctgcttccaggtgaaattatggat
gttgggcagttcaaagaacgcaacacagctgtaatcatttctggaggtattccagcaaca
gcccaaagcgtcattctgggaattactaaggcagcgcttgagacgaatagtttcttgtcg
gctgcttccttccaggaaacgactcgtgttctaacggatgcttcaatcaggggtaagaat
gaccccctgcttgggctgaaagaaaatgtaattattggtaagattattccagctggtact
ggtttgccagtttatcgggacatggaacctgaatctgacacgaaaaagccggaatctgtt
tattcaatcgctgacatcgaaaaagagatgaaggagactgacgaagcagaggaaccacag
gcctaa
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integrated database retrieval system
