Lactobacillus xylocopicola: KIM322_11970
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Entry
KIM322_11970 CDS
T09734
Symbol
trcF
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lxo
Lactobacillus xylocopicola
Pathway
lxo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KIM322_11970 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lxo03400
]
KIM322_11970 (trcF)
Enzymes [BR:
lxo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KIM322_11970 (trcF)
DNA repair and recombination proteins [BR:
lxo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KIM322_11970 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
AAA_22
IstB_IS21
BBMV_Gp1_N
Y_Y_Y
ERCC3_RAD25_C
TetR_C_27
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BDR60936
LinkDB
All DBs
Position
complement(1289593..1293084)
Genome browser
AA seq
1163 aa
AA seq
DB search
MRLTKLIAKDRDLASFIAKTVKVENSLITGANAGAFSLLLKQIVTTLDRPLILIEENENK
AQKLFSELVAVMPVGSVQLFPVDTTIATQTAVSSPDELSSRIQALNFLLSQRQGIVVTVP
QGLQYKLSQPEDYAATKRALKPGAEYVLAELASWLVGAGYQRENLVAKPGEFALRGDILD
IYPLDRENPVRIEFFGDEVDTVKEFDLASQRSQKELDQVVVSAAQDRIFQESDFKRAAAA
ITQAMAAAPAPAKAVQEHFAQVVDDLQNATLPQNYAFLVDYLIAQPSTLLDYLGQDGLVM
LDDWPLIDQAVQTVDQQNAGFVDDELKTGAMLPGQELRTNFSQTWSGDQHHHIYFSLFQR
SIGRIRLGQLFDWPTRQPEQFFSQLPLLKTELASYQKKGQTVILQADNAKRARQINQTLT
EFGLEVPIVEPDQLTEGQTQIMVGAFASGFTLPNNNLVYLTEHELFNKTTHHTRRIKTLE
NAQRLRSYTELKPGDYVVHVNHGIGRFEGIKTLENNGLKRDYITITYQHGDQLFVPADQL
KLVQKYVASEGKRPHVNKLGGSEWAKTKHKVQSKVEDIADDLIDLYAKREAEKGYAYAAD
DELQHQFEDAFPYVETPDQLRSIAEVKHDMEQARPMDRLLVGDVGFGKTEVALRAAFKAI
EAGKQVAFLVPTTILAQQHYETIVDRFKNFPVNYAVLSRFQTIAEAKEIVHRLELGELDL
VVGTHRLLSKDVQFKDLGLLIVDEEQRFGVKHKERLKELKANIDVLTLTATPIPRTLHMS
MVGVRDLSVMETPPANRYPIQTYVMEQLPSVIKDACLREMQRAGQVFYLHNRIGDIEDVV
TELQKLLPTARIASVHGRMSKNQMEDILYRFLNREFDVLVTTTIIETGIDMPNVNTMIVE
NADHYGLSQLYQLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLEAIRDFTELGSGFKIA
MRDLSIRGAGNMLGAQQHGFIDSVGYDLYSQMLADAIKDRQGKPRRAKSNAEIDLGLEAY
IPNSYIADQEEKIEFYKKIKAAGVDEIAQIQDELIDRFGDYPKPVENLLAISQVKAAADL
AQVLTMVRAKQQVKVEFQVQASTELTGPNIFKALEHVSFKTKINLTPQKRLVVLLELPAG
LQTRSLFNELMTFMTAVTAIIQR
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttaaccaagctgattgctaaagaccgtgacctggccagtttcattgccaagacg
gtcaaagttgaaaactcgttaatcacgggcgccaatgccggtgcttttagtctgctctta
aaacaaatagtgactacacttgaccgtccactgatcttaattgaagaaaatgaaaataag
gctcaaaaacttttcagtgagttagttgcagtgatgccagttggcagtgtacagctcttt
ccggtagacacaacaattgccacgcagaccgcagtcagttcgccggatgaattaagcagc
cgcattcaagcactcaactttttgttaagtcagcggcaggggattgtggtgacggtaccg
caaggcttgcagtacaagttatcgcaacctgaagactatgcagctactaaacgtgcgtta
aagccgggagctgaatatgttttagctgagctggccagctggctagttggtgcgggttac
caacgggaaaatttggtggccaaaccgggcgaatttgcgttgcggggggatattttagat
atttacccattagaccgtgaaaatccggtcagaattgaattttttggcgatgaggttgat
acggttaaggagtttgacctagccagtcagcgtagccaaaaagaactagaccaagttgtg
gtgtcagcggctcaagaccggatttttcaggagagcgacttcaagcgcgcggcggcggca
attacgcaggcgatggcagcagccccggctccagccaaggcagtccaagagcattttgcc
caagttgttgatgacttgcaaaacgcaacgctgccgcaaaattatgcttttttagttgac
tacctaattgcgcaaccgagtactctactcgattatttggggcaagatggtttggttatg
cttgatgactggccactaatcgatcaagcggtgcagacggttgaccaacagaatgctggc
tttgttgatgatgaactcaaaacgggcgcaatgcttccagggcaggaactgcggacgaac
ttttcgcaaacatggtctggtgatcagcaccatcatatttacttttcactttttcagcgg
agtattggtcggattcggttggggcagttatttgactggccgacgcggcagcccgaacaa
ttctttagtcagctgcccttgttgaagacagaactggcttcttaccaaaagaaggggcag
actgtcatcttgcaggctgataatgccaaaagagcaagacaaattaaccagactttgacg
gaatttgggttagaagtgccaatagttgagccagatcaactgactgaaggccaaacgcag
attatggtcggtgcttttgccagcggctttaccctacctaataacaacttagtctacttg
actgaacacgaattatttaataaaactacccaccacactcgcaggattaaaacgctggaa
aatgcccaacggttgcgcagttacacggaactcaagcctggcgactatgttgtccatgtg
aatcatggtattggtcgctttgaagggattaaaacactagaaaataacggccttaagcgc
gattatattaccatcacttaccagcatggtgaccagctgtttgtaccagctgaccagttg
aagttggtgcaaaagtatgtggcctcagaggggaagcgaccacacgttaacaagttgggt
ggcagcgagtgggccaaaaccaaacataaggtacaatccaaggtcgaagatattgctgat
gacctgattgatttgtatgccaagcgtgaagcagaaaagggttacgcctatgctgcagat
gatgaattgcagcaccagtttgaagacgccttcccttatgtagaaactcctgaccagttg
cggtcaatcgctgaagttaagcacgatatggaacaagcgcggccgatggatcgcttactg
gttggggatgttggctttggtaaaactgaggtagctttgcgcgctgccttcaaggcaatc
gaggctggcaagcaagttgcttttttggtgccaacgaccattttagcccagcagcattat
gaaacaattgtggacaggttcaaaaatttcccggttaactatgcagttttgtcacgcttt
caaacgatcgccgaagctaaagaaattgttcataggctggagcttggtgagcttgatctg
gtggttggaactcaccgcctcttgtctaaggatgttcagttcaaggacttgggactgtta
attgttgatgaagagcagcgctttggcgttaaacataaagagcgactaaaagagctcaag
gctaatatcgacgtcttaactctaacggcaacgccaattccgcggacgttacacatgtca
atggtcggcgtgcgcgacttatcggtaatggagacgccgccagcgaatcgctatcccatc
cagacttatgtaatggaacagcttcccagcgtcatcaaggatgcctgcctgcgggagatg
caacgcgctggccaggtcttttacttgcacaaccggattggtgatattgaagatgtagtt
actgaattgcaaaagctgctgcctactgcccgcattgccagcgtccatggccggatgagt
aagaatcagatggaagacattctttaccggtttttaaaccgagaatttgacgtcttagta
acaacaaccatcattgaaacgggcattgacatgccgaacgttaatacgatgattgttgaa
aatgctgaccactacggcctaagtcagttatatcagctacgcggccggattggccgaagt
gcgcgtttggcttatgcatacttcctctatcaacctaataaagttttgactgaagtaggc
gaaaagcgcctggaagcaatccgggactttaccgaactgggttcaggcttcaagattgcc
atgcgcgatttatcaattcgcggtgctggtaacatgcttggcgctcaacaacacggcttc
atcgatagtgttggctatgacctctactctcaaatgctcgctgatgccattaaagaccgt
cagggtaagcccagacgggcaaagagtaatgctgaaattgacttgggccttgaagcctat
attcccaacagctacattgctgaccaagaagaaaagattgaattttacaagaaaattaag
gcagcaggggtagatgaaattgcccaaattcaggatgaattgattgaccgctttggtgat
tatcctaagcccgtggaaaacttactagctatttctcaggtcaaagccgctgcggattta
gctcaggttctgaccatggtgagggcaaagcagcaagtcaaagtggagtttcaagtacag
gcatccacggaattgaccggaccaaatatttttaaggcattggaacatgtctcgttcaaa
actaaaatcaatttaacgccgcaaaagcggttagtggtattgttagaattaccagccgga
ctgcagacacgtagcttattcaatgaattgatgaccttcatgactgcagtgacggccatt
attcaaagataa
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