Lactobacillus xylocopicola: KIM322_12040
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Entry
KIM322_12040 CDS
T09734
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lxo
Lactobacillus xylocopicola
Pathway
lxo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIM322_12040 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxo03019
]
KIM322_12040 (cshA)
03009 Ribosome biogenesis [BR:
lxo03009
]
KIM322_12040 (cshA)
Enzymes [BR:
lxo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KIM322_12040 (cshA)
Messenger RNA biogenesis [BR:
lxo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KIM322_12040 (cshA)
Ribosome biogenesis [BR:
lxo03009
]
Prokaryotic type
rRNA helicases
KIM322_12040 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDR60943
LinkDB
All DBs
Position
complement(1296980..1298536)
Genome browser
AA seq
518 aa
AA seq
DB search
MKFTELGLNDELLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFALPIL
QNLDKDKKVIQALIIEPTRELAIQTQEELFRLGRDEHARVQVVYGGADIGRQIRSLKNNV
PAILVGTPGRLLDHLKRKTVNLEDVSTIVLDEADEMLDMGFIQDIESILSYVKNRKQTLL
FSATMPKPILNISEKFMHDPEVVQVKAKELTADLIDQYYVRAKDSEKFDIMCRLFDVQNP
DLAVIFVRTKRRVDEITRGLQARGYNAAGIHGDLSQARRISVLKRFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGNSITFVTPGEMSYMKTIERLTK
KKMMPLTPPTDDQALHGQLKIAKTKIEDLMKEDLSKYTDDASELLENYSAVDLAAALLKN
LSKDSADVEVNISSQKPLPSRGGNGRRGGGRSRGNYGHGGGRGRSGRGGYRGGERGHNDH
GYSGYRGGDHGRSGGGYRGNNSHRSGGGHSFVIKNKKD
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttacggaattaggattaaatgatgagctattaaaggccattaaacgttcagga
tttgaggaagcaacgccaatccaggaacaaacaattccccttgccttagcgggtaaggat
gtaattggacaggcccagacgggtaccggtaagaccgccgcctttgccctaccaatttta
caaaacttagataaggataagaaggtaattcaagcgttaattattgaacctacgcgtgaa
ttagccatccaaacccaggaagaactcttccgtttaggccgtgacgaacatgctcgtgtg
caagttgtctatggtggagctgatatcggccggcagattcggtcacttaaaaataatgtt
ccagccatcttagttgggaccccaggccgtttgcttgatcacttgaagcggaaaacggtc
aatctggaagacgtttctacgatcgtcttagacgaggctgatgaaatgcttgacatgggc
tttattcaagacatcgaaagcatcttaagctatgtgaagaaccggaagcagacattgctg
tttagtgcgacaatgcctaagccaattttaaatattagtgaaaagttcatgcatgatcct
gaggttgtgcaggttaaggccaaagagctgaccgccgacctgattgatcagtattacgtg
cgcgctaaagattccgaaaagtttgacattatgtgtcgcttattcgatgttcagaatcct
gacttagccgttatctttgtccggactaaacggcgagttgatgaaatcacgcgcggcttg
caggcacgtggctacaatgcagctggtattcatggcgacctgtcgcaagcgcgccggatt
agcgtgttgaagcggttccgtgcaggaaaattagatatcttggtagcaactgacgttgct
gcccgtggtcttgacatttcaggtgtaacccacgtgtacaactacgacattccgcaagac
ccagattcttacgtccaccgtattggtcgtactggtcgggcagggcaaaatggtaattcg
attacctttgttacgcctggtgaaatgagctatatgaagacaatcgaaaggttgactaag
aaaaagatgatgccgctcactccaccaacggatgaccaggctttgcacggtcaacttaag
attgctaaaaccaagattgaagacctgatgaaggaagatctttccaagtatactgatgat
gccagtgaattgttggaaaactattctgctgttgaccttgcagctgcactgttgaagaat
ttgtctaaggattcagctgatgttgaggttaatataagttcacaaaaaccattgccatca
cgtggcggcaacggccgccgcggtggtggtagaagccggggcaattacggtcatggcggc
ggccggggccgcagcgggcgcggtggataccgcggcggtgagcgcggtcataatgatcat
ggctacagtggttatcgcggcggtgaccatggccgcagcggtggcggttatcgcggtaat
aactcacaccggtcaggtgggggtcacagctttgtgattaagaacaaaaaagattaa
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