Lentzea xerophila: ACRSBM_17425
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Entry
ACRSBM_17425 CDS
T11210
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lxr Lentzea xerophila
Brite
KEGG Orthology (KO) [BR:
lxr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxr03019
]
ACRSBM_17425 (hrpA)
Enzymes [BR:
lxr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACRSBM_17425 (hrpA)
Messenger RNA biogenesis [BR:
lxr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACRSBM_17425 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
ABC_tran
nSTAND3
nSTAND_NTPase5
AAA_23
T2SSE
NACHT
AAA_30
AAA_25
SLFN-g3_helicase
Zeta_toxin
ResIII
Motif
Other DBs
NCBI-ProteinID:
XWW38330
LinkDB
All DBs
Position
3676875..3680741
Genome browser
AA seq
1288 aa
AA seq
DB search
MDTPHAELHKRLPELMPRDQRRLARRLDGARKVKDPMARRKITEEIAAQIDEAALKVALR
RESVPKITYPQELPVSQRKDDIKELIAHNQVVIVAGETGSGKTTQLPKICLELGRGITGQ
IGHTQPRRIAARTVAERVAEELGTKLGDTIGYKVRFTDQSGDETLVKLMTDGILLAEIQT
DRTLSRYDTIIIDEAHERSLNVDFLLGYLKQLLPRRPDLKIVITSATIDPQRFSQHFAGA
PVIEVSGRTYPVETRYRPLDEDDDQTQGIVNAVHELQAEGPGDVLVFLSGEREIRDTADA
LKAEDLRDTEILPLYARLSVGEQHRVFQRHTGRRVVLATNVAETSLTVPGIKYVIDPGTA
RISRYSHRLKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEEDFDARPEFTDAEIL
RTNLASVILQMTNIGLGDVAKFPFIDPPDARNINDGVGLLQELGAINAAEKTLTPTGRKL
AALPVDPRLGRMVLEADTTGCLKEVMIIAAALSIQDPRERPADQQEAATQQHARFVDKES
DFLTFLNLWHYLKDKQKELSGNQFRKLCKSEFLNYLRVREWQDIYLQLRQVAKQIGMHLD
DQPGDPRNIHIALLSGLLSHIGVQDVLKKQAPGEKRRPLTEFLGARNAKFAIFPGSALAR
KPPQWVMAAELVETSRLWGRIVAKIEPEWAERLGEHVVKRQYSEPHWETKRGSVVALEKV
TLYGVPIVAGRKVNYGRIDPELSRELFIRHALVQGEWTTHHRFFHTNRALLDEVGELENR
ARRRDIVVDEETLYEFYDKRVAPEVVSARHFDSWWKKQKDKNQLTFTKEMLVNDRADVSP
DAYPDQWRQGELTLPLSYHFEPGSRNDGITVQLPLPALTTLDDDAFSWQIPGLRHDLVVA
LIRSLPKQIRRNFVPVPDVATAVLARIKPEETSLLNGVERELRALTGVTVHREDWQFDAV
PDHLKLTFQVVDEQNRTLAEGKDIAALKEKLRDEVRESLSQAAGHLERTGLTTWDFDALP
KTIEQRQSGITVTAYPSLVDQGDTVAIKVLDTPGRQAHAHRRGVRRLLLLGINSPVKHLQ
RHLDNAAKLALTRNPHGGVAALLSDCIMAAVDRLMGDPAWDAKSYAAQLRKVQAALNDTT
WVVVQEVRKVLEAAHEAELKLTGLKGAPDSAADIRAQLNSLVYKGFVTHTGYDRLPDLVR
YLKGIARRIEKLPENPRRDLEWTDKVHQVHAEYRELRAQTPADEPAPELDEIRWMIEELR
LSYFAQTIGTRYTVSDKRIYKALDAVPL
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggacaccccgcacgctgaactgcacaaacgcctgcccgagctcatgccgcgtgatcaa
cgccggctcgccaggcgcctcgacggcgcacgcaaggtcaaagacccgatggcgcgccgc
aagatcaccgaggagatcgccgcccagatcgacgaggccgcgctcaaggtcgcgctgcgc
agggagtccgtccccaagatcacctatccgcaggaactgccggtcagccagcgcaaggac
gacatcaaagagctgatcgcgcacaaccaggtcgtgatcgtcgccggcgagaccggctcg
ggcaagacgacgcagctgcccaagatctgcctggaactcggccgcggcatcaccggccag
atcggccacacccagccccgccgcatcgccgcccgcaccgtcgccgaacgcgtcgccgag
gagctcggcaccaagctgggcgacaccatcggctacaaggtccgcttcaccgaccagtcc
ggcgacgagacgctggtcaagctcatgaccgacggcatcctgctcgccgagatccagacc
gacaggacgctgagccgctacgacacgatcatcatcgacgaggcccacgaacgcagcctc
aacgtcgacttcctgctcggctacctcaaacagctcctgccgcgccgccccgacctcaag
atcgtgatcacctccgccacgatcgacccgcaacgcttcagccagcacttcgcgggcgcc
ccggtcatcgaggtctccggccgcacctatcccgtcgagacccgctaccggcccctcgac
gaggacgacgaccagacccagggcatcgtcaacgccgtccacgaactgcaggccgaaggc
cccggcgacgtcctggtgttcctgtccggcgagcgcgagatccgcgacaccgccgacgcc
ctcaaagcagaagacctccgcgacaccgagatcctcccgctctacgcacggctgtccgtg
ggcgagcagcaccgggtcttccagcgccacaccggccgccgcgtcgtgctcgccaccaac
gtcgccgagaccagcctcaccgtgccaggcatcaagtacgtcatcgaccccggcaccgcc
cgcatctcccgctacagccaccgcctcaaggtccagcggctgccgatcgaacccatcagc
caggcgtcggccaaccagcgcaagggccgctgtggccgcgtcagcgaaggcatctgcatc
cggctgtactccgaagaggacttcgacgcccgcccggagttcaccgacgcggagatcctg
cgcaccaacctcgccagcgtcatcctgcagatgaccaacatcggcctcggcgacgtcgcg
aagttcccgttcatcgacccgccggacgcccgcaacatcaacgacggcgtcggcctgctg
caggagctcggcgccatcaacgccgccgagaagacgctcacgccgacgggccgcaagctc
gccgccctgcccgtcgacccccggctgggccgcatggtcctggaagccgacaccaccggc
tgcctcaaagaggtcatgatcatcgccgcggcactgtccatccaggacccccgcgaacgg
ccggccgaccagcaggaggccgccacccagcagcacgcgcggttcgtcgacaaggaatcc
gacttcctcacgttcctcaacctctggcactacctcaaggacaagcagaaggaactgagc
ggcaaccagttccgcaagctgtgcaagagcgagttcctcaactacctgcgcgtgcgcgag
tggcaggacatctacctgcagctgcggcaagtcgccaagcagatcggcatgcatctggac
gaccagcccggcgacccccgcaacatccacatcgccctgctgtccgggctgctcagccac
atcggcgtccaggacgtcctcaagaagcaggccccgggcgagaaacgccggccgctgacg
gagttcctcggcgcccgcaacgccaagttcgcgatcttccccggctccgcgctcgccagg
aaaccaccgcagtgggtgatggccgccgaactcgtcgagaccagccgcctgtggggccgc
atcgtcgccaagatcgaacccgaatgggccgaacgcctcggcgaacacgtcgtcaaacgc
cagtactccgaaccgcactgggaaaccaaacgcggcagcgtggtcgcgttggagaaggtg
acgctctacggggtgccgatcgtcgccggccgcaaggtcaactacggccgcatcgacccc
gagctgtcacgtgagctgttcatccgccacgcgctcgtgcagggggagtggaccacgcac
caccggttcttccacaccaaccgcgcgctgctcgacgaggtcggcgaactggagaaccgc
gcgcggcggcgggacatcgtcgtcgacgaggagacgctgtacgagttctacgacaagcgc
gtcgcccccgaggtcgtgtccgcgcggcacttcgactcgtggtggaagaagcagaaggac
aagaaccagctcaccttcaccaaggagatgctggtcaacgaccgcgccgacgtcagcccc
gacgcctaccccgaccagtggcgccagggcgagctcacactgccgctgagctaccacttc
gaaccgggcagccgcaacgacggcatcaccgtccagctcccgctgcccgcgctcaccacc
ctggacgacgacgcgttctcctggcagatccccggcctgcgccacgacctcgtcgtcgcg
ctcatccgctcgctgcccaagcagatccgccgcaacttcgtgcccgtccccgacgtcgcc
accgcggtcctcgcccgcatcaagcccgaggagaccagcctgctcaacggcgtcgaacgc
gagctgcgggcgttgaccggtgtcaccgtgcaccgcgaggactggcagttcgacgccgtc
cccgaccacctcaagctcaccttccaggtcgtcgacgagcagaaccgcaccctcgccgaa
ggcaaggacatcgccgcactcaaggagaagctgcgcgacgaggtccgcgagtcgctgtcg
caggccgccggccacctcgaacgcaccggcctgaccacctgggacttcgacgcgctgccc
aagaccatcgagcaacggcagtccggcatcaccgtcaccgcctacccctccctggtcgac
cagggcgacaccgtcgcgatcaaggtcctcgacacccccggccgccaggcccacgcccac
cgccgcggcgtgcgcaggctcctgctgctcggcatcaactccccggtcaaacacctgcag
cgccacctcgacaacgccgccaaactcgcgttgacccgcaacccgcacggcggcgtcgcg
gcgctgctgtcggactgcatcatggccgccgtcgaccggctcatgggcgaccccgcctgg
gacgccaagtcctacgccgcacagctcaggaaggtccaggccgccctgaacgacaccacc
tgggtcgtcgtccaggaagtccgcaaagtcctcgaagccgcccacgaagccgaactgaaa
ctcaccggcctcaagggcgcgccggactcggccgccgacatccgcgcacagctcaactcg
ctggtgtacaagggattcgtcacccacaccggctacgaccggctgcccgacctcgtccgc
tacctcaaaggcatcgcccggcgcatcgagaaactgcccgagaacccgcgccgcgacctc
gagtggaccgacaaggtccaccaggtccacgccgagtaccgggaactgcgcgcccagacc
ccggccgacgaacccgcgcccgaactcgacgagatccgctggatgatcgaggaactgcgc
ctgtcgtacttcgcccagaccatcgggacccgctatacagtcagcgacaagcgcatctac
aaggcattggacgccgtaccgctgtga
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