Lentzea xerophila: ACRSBM_29300
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Entry
ACRSBM_29300 CDS
T11210
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lxr Lentzea xerophila
Brite
KEGG Orthology (KO) [BR:
lxr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lxr03016
]
ACRSBM_29300
Enzymes [BR:
lxr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACRSBM_29300
Transfer RNA biogenesis [BR:
lxr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACRSBM_29300
Prokaryotic type
tRNA splicing ligases
ACRSBM_29300
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XWW40569
LinkDB
All DBs
Position
6200404..6201582
Genome browser
AA seq
392 aa
AA seq
DB search
MAATLVRGQNVDIRMWTRPDEVEEFAMRQLQNISALPWAVKHIAVMPDVHYGKGATVGSV
IALRDAVSPAAVGVDIGCGMAAVRTSLTASDLPETLRGLRSRMEAVVPVGFGQHKATAFT
DRDASDWGTFWRKFDDLTPAVKARADKAMHQMGTLGGGNHFLEVCLDTDQRVWVMLHSGS
RGIGNELAQHHISVARTLAHNAELPDPDLAVFLSGTPEMAAYRHDLYWAQDYARRNRAVM
LRLVCDVLRAEFPQIAFEKPISCHHNYVSEENHFGEDVLVTRKGAIRAGRGELGIIPGSM
GTGSYIVRGLGNPDSFESASHGAGRKMSRNKARKTFTEQDLAAQTSGVECRKDSGVVDEI
PGAYKDIDAVMANQSDLVEVVAKLKQVVCIKG
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaccctggtccgcggccagaacgtggacatccgcatgtggactcggcccgac
gaggtcgaggagttcgccatgcggcagcttcagaacatctccgcgctgccgtgggccgtc
aagcacatcgcggtcatgcctgacgtgcactacgggaagggcgccacggtgggctcggtg
atcgcgctgcgcgacgccgtctccccggcggccgtcggcgtggacatcggctgcggcatg
gccgccgtgcgcacctcactcacggcgagcgacctcccggagacgttgcgtggcctgcgg
tcccgcatggaggccgtggtccccgtcggtttcggtcagcacaaggcgaccgcgttcacc
gacagggacgcgtccgactggggaacgttctggcggaagttcgacgacctgacgccggcg
gtgaaggcccgcgccgacaaggcgatgcaccagatgggcacgctcggcggcgggaaccac
ttcctcgaggtctgcctggacaccgaccagcgggtgtgggtgatgctgcactccgggtcg
cgcggcatcggcaacgagctggcgcagcaccacatctcggtggcgcgcacgctcgcgcac
aacgccgagctgccggacccggacctcgccgtgttcctctccggtacgcccgagatggcg
gcgtaccggcacgacctgtactgggcgcaggactacgcgcggcgtaaccgcgcggtcatg
ctgcgcttggtatgcgacgtgctgcgcgccgagttcccgcagatcgcctttgagaagccg
atctcgtgccaccacaactacgtctccgaggagaaccacttcggtgaggacgttctggtg
acgcgcaagggtgcgatccgcgccgggcgtggcgagctggggatcatcccgggctcgatg
ggcaccggctcgtacatcgtgcgcggcctcgggaacccggactcgttcgagtcggcatcg
catggcgccggccggaagatgtcgcgcaacaaggcccgcaagacgttcaccgagcaggat
ctcgccgcccagacaagtggcgtcgagtgccgcaaggactccggtgtggtggacgagatt
ccgggcgcctacaaggacatcgacgccgtgatggcgaaccagtccgacttggtcgaggtg
gtcgccaagctcaagcaggtggtatgcatcaagggctga
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