Leifsonia xyli subsp. xyli CTCB07: Lxx08340
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Entry
Lxx08340 CDS
T00190
Name
(GenBank) ATP-dependent RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxx03019
]
Lxx08340
Enzymes [BR:
lxx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Lxx08340
Messenger RNA biogenesis [BR:
lxx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Lxx08340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
nSTAND_NTPase5
IstB_IS21
nSTAND3
AAA_22
MTR4_beta-barrel
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
AAT88736
UniProt:
Q6AFV9
LinkDB
All DBs
Position
838765..841200
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AA seq
811 aa
AA seq
DB search
MTDQQQLSPAERFAASHQRARQPLLETFLTGLGFDLDPFQREACTCLENGRSVLVAAPTG
AGKTIVAEFAVFLAMRQANAKVFYTTPMKALSNQKFQEFQDTYGPESVGLLTGDTNINSH
ARIVVMTTEVLRNMLYADSDLLGDLAYVVMDEVHYLADRFRGAVWEEVIIHLPPAVRMVS
LSATVSNAEEFGDWLQAVRGDTDVVVSEERPVPLEQHILMRSKLIDLFDSSGLAAANRVN
PELVQMARSGGRVLSSRQRRDIGRYHSRGGRPDSFRMNRAEIVRLLDEHNLLPAIFFLFS
RNGCDAAVRQTLRAGVRLTEQRERDDIRSIVEERCRTLMDEDLAVLGYWEWLEGLEHGVA
AHHAGMLPAFKEVVEELFRRKLVKVVFATETLALGINMPARTVVLEKLEKFNGESRVPIT
PGEYTQLTGRAGRRGIDVEGNSVIQWEDGLDPQSVASLASRRSYPLNSSFRPTYNMAVNL
IDQFGRQRTREILESSFAQFQADRAVVDLARKVRQQEESLAGYEKAMTCHLGDFREYSGV
RRELTDLERKGQRLDSASRADRDRRQRQLTELRKRMREHPCHRCSDREQHARWAERWWKL
KRETDLLSAQIQSRTGAVAKVFDRVSDVLDELGYLVVEDGVTKLTVHGRTLKRIYGERDL
LVAECLRRGTWKELDAPSLAAMACALVFEPRRDDGLGHDRALPRGAFLPALDKTTDLWAR
LDDRERENRLPGSEPPSTALALAMHQWARGSGLDAVLREADMAAGDFVRWTKQTIDLLDQ
LSLVAQGNLGRTARQALEAIRRGIVAYSSVA
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatcagcagcagctctccccggccgagcgcttcgccgcttcgcaccagcgtgcc
cggcagcccctgctcgagacgttcctgacggggctgggcttcgacctcgatccgttccag
cgggaggcatgtacgtgcctggagaacggccggagcgtgctcgtggccgcgcccaccggc
gcgggcaagacgatcgtcgcggagttcgccgtgttcctcgccatgcgccaggcgaacgcg
aaggtgttctacaccactccaatgaaagccctgagcaaccagaagttccaggagttccag
gacacttacggtcccgagtcggtcggtctgctcaccggcgacacgaacatcaactcgcat
gcccggatcgtcgttatgacgaccgaggtgctgcgcaacatgctgtacgcggactccgat
ctgctcggcgatctggcgtacgtggtcatggacgaggtgcattacctcgccgaccggttc
cgcggcgctgtgtgggaagaggtcatcatccatctccccccggcggtgcggatggtgtcg
ctcagcgcgacggtgtccaacgcggaggagttcggcgactggctgcaggcggtccgcggc
gacaccgatgtcgtcgtctccgaggagcgtccggtgccgctggaacagcacatcctgatg
cgctccaagctgatcgacctgttcgactcgtcggggctggcggcggccaaccgagtgaac
ccggagctcgttcagatggcacgctccgggggccgcgtgctcagcagccggcagcggcgg
gatatcggacggtatcattcgcgaggcggacggccggactcgttccggatgaatcgcgcc
gagatcgtgcggctgctggacgagcacaacctgcttcccgccatcttcttcctcttcagc
cgcaacggttgcgacgccgccgtacggcagactctgcgggctggtgtccggctgaccgaa
cagcgcgagcgcgacgatattcgctcgatcgtggaggagcgctgccggacgctgatggac
gaggacctcgccgtgctcggctactgggagtggctggaagggctggagcacggtgtcgcc
gcccaccacgccgggatgctgccggccttcaaagaggtcgtggaagagctgttccggcgc
aagctcgtcaaggtcgtcttcgcgacggagacgctggcgctcggcatcaacatgccggcg
cggaccgtcgttctcgaaaagctggagaagttcaacggcgagtcccgcgttccgatcaca
ccaggggagtacacgcagctgaccgggcgcgccgggcgtcgcggcatcgacgtagaaggg
aactcggtcatccaatgggaggacggccttgatccgcagtcggtcgcatcgctcgcctcg
cggcgcagttaccccctgaactccagcttccggccgacgtacaacatggcggtcaatctg
atcgaccagttcggccgacagcgcacgcgcgagatcctggagtcgtcgtttgcgcagttc
caggccgaccgcgcggtggtcgatcttgcgcgcaaggtccggcagcaggaggagtcgctc
gccggctacgagaaagcgatgacctgccacctgggcgatttccgcgagtactccggtgtc
cgccgcgagctcaccgatctggaacgcaagggccagcgcctcgacagcgcctcgcgcgct
gatcgggaccgccgtcagcgacagctgaccgaactgcggaagcggatgcgcgagcacccc
tgccaccggtgctccgaccgtgaacagcacgcccggtgggccgagcgctggtggaagctg
aaacgcgagaccgacctgctcagcgcgcagatccagtcccgcaccggcgccgtcgcgaag
gtcttcgaccgagtctcggatgtcctggatgagctcggctaccttgtcgtggaagacggc
gtgacgaagctgacggtccacggccgcaccctgaagcgtatctatggggagcgcgacctg
ctcgtcgccgagtgcctgcgccgtggcacctggaaggagctggacgctccgagtctcgcc
gcgatggcctgcgccctcgtcttcgagccccgccgcgacgacgggctggggcacgaccgg
gcactgccgcggggggctttccttcccgcgctcgacaagacgaccgacctgtgggcgcgc
ctggacgatcgggagcgggagaaccgcctgcccggcagcgagccgccttccaccgctctg
gcgctcgcgatgcaccagtgggctcggggctcggggctggacgccgtgctccgcgaggcg
gatatggccgcgggcgacttcgtccgctggacgaaacagaccatcgatctgctcgatcag
ctctcgctggtcgctcaggggaacctggggcgcaccgcacggcaggcactggaggccatc
cgccgcggcatcgtggcgtactcctccgttgcctga
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