Leifsonia xyli subsp. xyli CTCB07: Lxx13450
Help
Entry
Lxx13450 CDS
T00190
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Pathway
lxx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lxx13450 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxx03019
]
Lxx13450 (deaD)
03009 Ribosome biogenesis [BR:
lxx03009
]
Lxx13450 (deaD)
Enzymes [BR:
lxx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lxx13450 (deaD)
Messenger RNA biogenesis [BR:
lxx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lxx13450 (deaD)
Ribosome biogenesis [BR:
lxx03009
]
Prokaryotic type
rRNA helicases
Lxx13450 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
HEM4
adh_short
Motif
Other DBs
NCBI-ProteinID:
AAT89175
UniProt:
Q6AEM1
LinkDB
All DBs
Position
complement(1396913..1398682)
Genome browser
AA seq
589 aa
AA seq
DB search
MMPATGSGEAETAADALTFADLGLDRAVLAVLKDVGYETPSAIQAATIPLLLEGRDVVGL
AQTGTGKTAAFALPILSRLDLSQKSPQALVLAPTRELALQVAEAFESYATHLKGVHLLPV
YGGQGYGVQLSALRRGVHIVVGTPGRIMDHLDKGTLDLSGLKHLVLDEADEMLKMGFAED
VEKILADTPDDKQVALFSATMPAQIRRISKKYLHDPEEVTVKARTTTSANTTQRYLVVSY
SQKVDALTRILEVENFEAMIVFVRTKNETETLAERLRARGYSAAAISGDVAQAQRERTVG
QLKSGKLDILVATDVAARGLDVDRISHVVNFDIPVDTESYVHRIGRTGRAGRSGAAISFV
TTRERRLLTAIEKATRQPLTPMPLPSVDDVNVTRLARFDDAITSALAQQDRISRFRDIIA
HYVAHHDVPEADVAAALAVVAQGEEPLLLSADDALTQRIERDARDDRLARAGRDDRGRGE
RPVRRDRGYRPMAPYRIEVGKRQRVEPRQIVGALANEGGLSRDDFGHIRIMPDFSIVELP
ADLPGDTLARLTGTRISGKLIELRPDRGAGARRKPDERGERPPRKPRRR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgcaaccgggagcggcgaggcggagaccgccgccgacgcactgaccttcgcc
gatctcggtctggaccgggctgtgctcgccgtcctgaaggatgtcggctacgagacgccg
tccgccatccaggcggcgacgatcccgctgctgctcgaggggagggacgtggtcgggctc
gcccagaccgggaccgggaagacggcggccttcgcccttcccatcctgtcccgcctcgac
ctgtcgcagaagagcccgcaggcgctcgtgctcgcccccacccgcgagctggcgctgcag
gtggcggaggcgttcgagagctatgcgacgcatctgaaaggcgttcatctgctgccggtg
tacggcggccagggttacggagtgcagctctccgcgctgcgccgaggcgtgcatatcgtg
gtgggcacgcccggccgcatcatggatcacctcgacaaggggacgctcgacctctccggg
ctcaagcacctcgtgctcgacgaagcggacgagatgctgaagatgggtttcgccgaggac
gtggagaagattctcgccgacacgcccgatgacaagcaggtcgcgctgttctccgccacg
atgccggcgcagatccgccgcatttcgaagaagtacctgcacgatcccgaagaggtcacc
gtcaaggccaggacgacgacgtcggccaacacaacgcagcgctatctcgtcgtttcgtac
tcgcagaaggttgacgcgctcacccgcatcctcgaggtcgagaacttcgaggcgatgatc
gtcttcgtccggacgaagaacgagacggagacgctcgcggagcggctccgggcccgcggt
tactcggcggcggcgatcagcggcgacgtcgcgcaggcccagcgggagcgcacggtcggc
cagctgaaatcgggcaagctcgacatcctggtggccacggacgtggcggcgcgcgggctc
gacgtcgaccgcatcagccatgtcgtcaacttcgacatccccgtggacaccgaatcgtat
gtgcatcgcatcggacggaccggccgcgccgggcgcagcggcgcggcgatcagcttcgtc
accacgcgtgagcgccggctcctcaccgccatcgagaaagccacccgtcagccgttgacc
ccgatgccgctcccgagcgtcgacgacgtcaacgtcacccgcctcgcccgcttcgacgac
gcgatcacgtccgccctcgcccagcaggaccgcatctcgcggttccgcgacatcatcgcc
cactacgtggcccatcatgacgtgcccgaggcggatgtggcggctgcgctcgctgtcgtc
gcccagggcgaggagccactgctgctctccgccgacgatgcgctcacccagcgcatcgag
cgggacgcacgcgacgaccggctggcccgggccggtcgtgacgaccgtggccggggcgag
cgcccggtgcgccgcgatcgcggctacaggccgatggcaccctatcgcatcgaggtcggc
aaacggcagcgggtggaaccgcgccagatcgtcggagcgctcgcgaacgagggcgggctg
agccgcgacgacttcggccacatccggatcatgcccgacttctcgatcgtggagttgccg
gcggatctccccggtgacaccctcgcgcggctgaccggaacgcgcatcagcggcaagctg
atcgaactgcggccggaccgcggcgcgggagcgcggcgcaaaccggacgaacgcggggaa
cgtccgccgcgcaagccgcggcgtcgctga
DBGET
integrated database retrieval system
