Leifsonia xyli subsp. xyli CTCB07: Lxx15160
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Entry
Lxx15160 CDS
T00190
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Pathway
lxx03030
DNA replication
lxx03430
Mismatch repair
lxx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lxx15160 (dnaE)
03430 Mismatch repair
Lxx15160 (dnaE)
03440 Homologous recombination
Lxx15160 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lxx03032
]
Lxx15160 (dnaE)
03400 DNA repair and recombination proteins [BR:
lxx03400
]
Lxx15160 (dnaE)
Enzymes [BR:
lxx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Lxx15160 (dnaE)
DNA replication proteins [BR:
lxx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Lxx15160 (dnaE)
DNA repair and recombination proteins [BR:
lxx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Lxx15160 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
Motif
Other DBs
NCBI-ProteinID:
AAT89322
UniProt:
Q6AE74
LinkDB
All DBs
Position
complement(1575846..1579361)
Genome browser
AA seq
1171 aa
AA seq
DB search
MADSFVHLHVHSEYSMLDGAARVKPLIDAAVEQGMPAVAVTDHGNMFGAFDFWRTAIDAG
IKPIIGTEAYLTPGTHRTDKTRIRWGDGGGDDVSGSGAYTHMTLLAATTEGMHNLFRMSS
LASIEGYYFKPRMDRELLSQYAKGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIFG
KENFYAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQSG
STLDDPNRFKFDADEFYLKTSEQMRQLFRDHPDACDNTLTIAERVDVRFDTAANYMPRFP
VPAGETEQTWFVKEVERGLAERYSNGVTPEVRKQADYEIGVISQMGFPGYFLVVADFINW
SKDNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSMPDFDVDFDDRR
RGEVIKYVTDKYGEERVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKLTKAMPPPVMGK
DIPLTGIFDKQHPRYKEALDIRAVVESDPEAKTVFDTALGLENLKRQWGVHAAGVIMSSD
PLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNIEANRGEKL
VLENLELDDRAAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISALIALYRPGPMG
ANSHTNYALRKNGQQEITPIHPELAQPLQDILSTSYGLIIYQEQVMAIAQKVAGFSLGQA
DILRRAMGKKKKSELDKQFEGFSQGMVENGYSVAAVNKLWEILLPFSDYAFNKAHSAAYG
VISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIEVLPPDVNESSLYFAA
VGEDIRFGMGAVRNVGANVVEGVREARESSGRFESFHDFLSRVPVHAANKRTVESLIKAG
AFDSLGYTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPNRSQHHIPERPE
WVKRDKLAFEREMLGLYVSDHPLAGLELHLAKLASTSIADLVASETVQDGETVVIAGLVT
SVQHRVAKASGNQYGMIQVEDFGGEMTAMFMGKAYQEFQGMLQGDSIVVVRGRVSLRDDG
MNLHAFSLMVPDLGQADDVGTVTITMPDQRATTDTVTELASVLTRHPGESEVQLRLVKGS
VARVFEVPKPVKVSPDLYGELKALLGPNCLV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggccgactccttcgttcacctccacgtccacagtgagtactcgatgctcgatggcgcg
gctcgcgtcaaaccgctcatcgacgccgcggtggagcaggggatgcccgccgtcgcggtc
accgaccacggcaatatgttcggcgcgtttgacttctggcgcaccgccatcgacgccgga
atcaaaccgatcatcggcacggaggcgtaccttacgccaggcacccaccgcaccgacaag
acccgcatccgctggggggacggcggcggggacgatgtctccggctccggcgcctacacg
cacatgactttgctcgctgcgacgaccgaggggatgcacaacctcttccggatgtcctcg
ctggcctccatcgagggctactacttcaagccgcggatggatcgcgagctgctcagccag
tatgccaagggcatcatcgcgacgacgggctgcccctccggagaggtccagacccgcctc
cggctcggccagtacgaggaggccaagaaagccgccgccgagttccgcgacattttcggc
aaagagaacttctacgccgagatcatggaccacgggctcggcatcgagcgccgcatcatg
tccgacctcatccggctggcgaaggagctcggcctcccgctggtcgcgacgaacgacctc
cactacacccacgccgccgatgcgaagagccacgcggcgctgctgtgcgtgcagtccggc
tccaccctggatgaccccaaccggttcaagttcgacgcggacgagttctacttgaagacc
tccgagcagatgcggcagctcttccgcgatcacccggacgcctgcgacaacacgcttacg
atcgccgagcgggtggatgtgcggttcgacaccgccgccaactacatgccgcgtttccct
gtcccggccggcgagaccgagcagacctggttcgtcaaggaggtcgagcggggcctcgcc
gagcgttactcgaacggtgtcacgccggaggtgcgcaaacaggccgactacgagatcggc
gtcatctcgcagatgggcttccccggctacttcctcgtcgtcgccgacttcatcaactgg
tcgaaggacaacggcatccgggtgggccccggccgcggttccggcgcgggttcgatggcg
gcctacgcgatgcggatcaccgacctcgacccgctgcggcacggcctcatcttcgagcgc
ttcctcaaccccgaccgcgtctccatgcctgacttcgatgtcgacttcgatgaccgccgc
cgcggcgaggtcatcaagtacgtgacggacaagtacggcgaggaacgggtcgcccagatt
gtcacgtacggcacgatcaaggccaaacaagcactcaaggactcctcccgcgtgctcggg
ttcccgttcgggatgggcgagaagctcaccaaggcgatgccgccgcccgtcatggggaag
gacatcccgctcaccgggatcttcgacaaacagcacccgcgctacaaggaggccctggac
atccgcgctgtcgtggagtccgaccccgaggccaagactgtgttcgacacagcgctcggc
ttggagaacctgaaacggcagtggggcgtccacgcggccggcgtgatcatgtcctcggac
ccgctcatcgacgtcatcccgatcatgaagcgggagcaggacggccaaatcgtcacgcag
ttcgactacccggcgtgcgaatccctcggcctgatcaagatggacttcctgggcttgcgg
aacctgacgatcatcaacgacgcgctcgacaacatcgaggcgaaccgcggcgagaagctg
gtactggaaaacctggagctggacgaccgcgccgcctacgaattgctctcccgcggtgac
acactcggcgtgttccagctcgacggcggcccgatgcgctcgctgctgcggctgatgaaa
ccggacaacttcgaggacatctcggccctcatcgcgctgtaccggcccggtccgatgggc
gcgaactcgcacaccaactatgcgctgcggaagaatgggcagcaggagatcacgcccatc
catcccgagctcgcgcaaccgcttcaggacatcctctcgaccagctacggcctgatcatc
taccaggagcaggtcatggccatcgcgcagaaggtcgcgggcttctcgctcggacaggcc
gacattctgcgccgtgcgatgggcaagaagaagaagtcggagctggacaagcagttcgag
ggcttctcacagggcatggtcgagaacggctactcggtggcggccgtgaacaagctctgg
gagatcctgctcccgttctccgactacgcgttcaacaaggcgcactcggccgcgtacggg
gtcatctcgtattggaccgcctatctcaaggcccactatccggccgagtacatggctgcc
cttctcaccagcgtcggcgactccaaggacaagatggcgctgtacctcaacgagtgccgt
cgcatgggcatcgaggtgctcccacccgacgtcaacgagtccagcctgtacttcgcggcc
gtcggcgaggacatccgcttcgggatgggcgcggtgcgcaacgtcggcgccaacgtggtc
gagggcgtccgggaggcgcgggagtcgagcggtcggttcgagtcgttccacgacttcctc
agcagagtgccggttcacgccgccaacaagcgcaccgtcgaatcgctcatcaaggcgggc
gctttcgactcgctgggctacacccgacgggcgctggtggaggtccacgaggatgcggtg
gagtccgcggtcaagatcaagcgcagcgaggccaatggcgatgtcgggttcgatttcgac
agtctgtggggggacgacgagccgaaccggtcgcagcaccacatccccgagcgtccggag
tgggtcaagcgcgacaagctcgcgttcgagcgcgagatgctcggcctgtatgtctccgac
catcctcttgcggggctggaactgcatttggcgaagctcgcgagcacgtcgatcgccgac
ctcgtcgcctcggagaccgttcaggacggcgagaccgtcgtcatcgcgggtctcgtgacc
agcgttcagcaccgtgtcgcgaaagcctccggcaatcagtacgggatgatccaggtcgag
gacttcggcggtgagatgaccgccatgttcatgggcaaggcctatcaggagttccagggc
atgctgcagggcgactcgatcgtcgtcgtgcgcggtcgcgtgagcctgcgcgacgacggg
atgaacctgcacgcgttcagcctgatggtcccggacctcggccaggccgacgacgtcggg
accgtgacgatcaccatgccggaccagcgggcgaccaccgacacggtcaccgaactcgcg
tccgtcctcacccgccatccgggcgagagcgaggtgcagctgcgactggtgaagggctcg
gtcgcccgcgtgttcgaggttccgaagccggtgaaggtctctcccgatctgtacggcgag
ctgaaggctctcctcgggccgaactgcctggtgtga
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