Leifsonia xyli subsp. xyli CTCB07: Lxx20640
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Entry
Lxx20640 CDS
T00190
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lxx
Leifsonia xyli subsp. xyli CTCB07
Pathway
lxx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lxx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lxx20640 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxx03021
]
Lxx20640 (rpoB)
03400 DNA repair and recombination proteins [BR:
lxx03400
]
Lxx20640 (rpoB)
Enzymes [BR:
lxx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lxx20640 (rpoB)
Transcription machinery [BR:
lxx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lxx20640 (rpoB)
DNA repair and recombination proteins [BR:
lxx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lxx20640 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AAT89769
UniProt:
Q6ACX5
LinkDB
All DBs
Position
complement(2115985..2119482)
Genome browser
AA seq
1165 aa
AA seq
DB search
MAAARNATNNDKTLKNGRDVSRLSFAKITDTLTVPDLLALQTESFDWLVGNDAWQARVAA
AEAQGRQDLPAATGLEEIFEEISPIEDLGETMQLSFTNPFLEEKKYSIDECKEKGRTYAA
PLYVEAEFMNHLTGEIKTQTVFMGDFPLMTERGTFIINGTERVVVSQLVRSPGVYFEAAA
DKTSDKDIYSARVIPSRGSWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILAE
FAGFQSIELTLEKDAILTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKV
GRYKINRKLGLEAPLTDSVLTVQDIIATIKYLVSLHDGQTSFTGLRSGVETDIRLDIDDI
DHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEF
FGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPE
GPNIGLIGSLASFARINSFGFIETPYRKVVDGLVTDQIDYLTASEEDDFVVAQANAPLDA
RGHFVEERVLARQKGGEVDLVPAEEIGYMDVSPRQMVSVGTSLIPFLEHDDANRALMGAN
MQRQAVPLLRSESPVVGTGMEGYAAIDAGDVVIAEKSGIVSEVSADAVTVQADDGTVKTY
YLRKFDRSNQGTSYNHRVVVDEGDRIEAGEVVADGPATENGELALGKNLLVAFMPWEGHN
FEDAIILSQNLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPDLLADLDERGII
RIGAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTIIGV
KVFDAQDGDDELGSGVNQRVVVYIAQKRKITAGDKLAGRHGNKGVISKILPVEDMPFLAD
GTPVDVILNPLGVPGRMNFGQVLEIHLGWIAKNGWEIKGKPKWAAELPETAFSAAPNTKV
ATPVFDGAKEEEIAGLLDVTLPTRDGDRLIGSSGKTQLFDGRSGEPYPDPVSVGYMYILK
LHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIK
SDDILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGQAVSLRDADD
EAFRAAEELGINISSRFESSSIDEI
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcaaccaacaacgacaagacactcaagaacggccgggacgtc
tcccgtctctcgttcgccaagatcacggacaccctcaccgtccccgatctgctcgcactg
cagacggagagtttcgactggctggtcggaaacgacgcctggcaggcgcgcgtcgccgcg
gccgaggcgcaggggcgtcaggatctgcccgccgccaccggcctggaggagatcttcgag
gagatctccccgatcgaggacctcggcgagaccatgcagctctcgttcacgaacccgttc
cttgaggagaagaagtactcgatcgacgagtgcaaggagaagggcaggacctacgctgcc
ccgctctacgtcgaggccgagttcatgaaccacctcaccggtgagatcaagacccagacg
gtcttcatgggtgacttcccgctgatgaccgagcgggggaccttcatcatcaacggcacc
gagcgtgtcgtggtgtcgcagctcgttcgctcgcccggcgtctacttcgaggccgccgcc
gacaagacctccgacaaggacatctactcggcgcgcgtcatcccgagccgcggttcctgg
ctcgagttcgagatcgacaagcgcgaccaggtcggcgtccgcatcgaccgcaagcgcaag
cagtcggtcaccgtcttcctcaaggccctcggtctgaccagcgaggagatcctcgccgag
ttcgccggcttccagtcgatcgagctgacgctggagaaggacgccatcctcaccaaggag
gaagcgctcaaggacatctaccggaagctccgtccgggcgagcaggtggccgccgaggcc
gcccgcgcgctcctcgacaacttctacttcaacccgaagcgctacgatctcgccaaggtc
ggccgctacaagatcaaccgcaagctgggcctggaagctccgctgacggactcggtgctg
accgttcaggacatcatcgcgacgatcaagtacctggtctccctgcacgacggccagacc
tcgttcacgggtctccgcagcggcgtcgaaacggacatccgcctcgacatcgacgacatt
gaccacttcggcaaccgtcgcatccgcgccgtcggcgagctcatccagaaccaggtccgc
accggtctctcccgaatggagcgcgtggtgcgcgagcgcatgaccacgcaggacatcgag
gcgatcaccccgcagaccctgatcaatgtgcggccggtcgtcgccgcgatcaaggagttc
ttcggaacgagccagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacc
cacaagcgccgcctctcggctctcggccctggcggcctgagccgtgagcgcgccggcgtc
gaggtccgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaa
ggcccgaacatcggtctgatcggctcgctcgcgtcgttcgcgcggatcaactcgttcggc
ttcatcgagaccccgtaccgcaaggtcgtggacggcctggtcaccgaccagatcgactac
ctgaccgcctccgaggaggacgacttcgtcgtcgcgcaggccaacgcgcctctcgacgcc
agaggccacttcgtcgaggagcgcgtcctcgcccgtcagaagggtggcgaggtcgacctg
gtccccgccgaggagatcggctacatggacgtctccccgcgccagatggtgtcggtgggc
acctccctcatccccttcctcgagcatgacgacgccaaccgcgctctcatgggcgcgaac
atgcagcgccaggcggtgccgctgctgcgctcggagagcccggtcgtcggaaccggtatg
gagggctacgcggccatcgacgccggtgacgtggtcatcgccgagaagtcgggaatcgtc
tccgaggtctcggccgacgcggtcaccgtccaggcggacgacggcacggtcaagacctac
tacctgcgcaagttcgaccgctcgaaccagggcacctcctacaaccaccgcgtggtcgtg
gacgagggcgaccggatcgaggcgggcgaggtcgtcgccgacggccccgccaccgagaac
ggcgagctcgcgctcggcaagaacctgctcgtcgcgttcatgccgtgggagggccacaac
ttcgaggatgcgatcatcctcagccagaacctggtgaaggacgacaccctctcctcgatt
cacatcgaggagtacgaggtcgacgcccgcgacaccaagctcggtaaggaagagatcacc
cgcgacctgccgaacgtcagcccggacctcctggccgacctcgacgagcgcggcatcatc
cgcatcggcgccgaggtccgccccggcgacatcctcgtcggcaaggtcaccccgaagggc
gagaccgagctgtcggccgaggagcgccttctccgcgcgatcttcaacgagaagagccgc
gaggtgcgcgacacctccctcaaggtcccgcacggtgaggagggcaccatcatcggtgtc
aaggtcttcgacgcgcaggacggcgacgacgagctcggctccggcgtgaaccagcgcgtg
gtggtctacatcgcccagaagcgcaagatcactgcgggcgacaagctcgccggccgtcac
ggcaacaagggcgtcatctcgaagatcctccccgtcgaggacatgccgttcctcgcggac
ggcacgccggtcgacgtcatcctgaacccgctcggcgtccccggccgcatgaacttcggc
caggtgctggagatccacctcggctggatcgccaagaacggctgggagatcaagggcaag
ccgaagtgggccgccgagctcccggagaccgcgttcagcgcggccccgaacacgaaggtc
gcgaccccggtgttcgatggcgcgaaagaggaggagatcgccggtctcctcgacgtcact
ctcccgacccgggacggcgaccgcctgatcggctcttccggcaagacgcagctcttcgac
ggccgctccggcgagccgtacccggacccggtttcggtcggctacatgtacatcctgaaa
ctgcaccacctcgtggacgacaagatccacgcccgctccacgggtccgtactccatgatc
acccagcagccgctcggcggtaaagcgcagttcggtggacagcgtttcggcgagatggag
gtgtgggccctggaagcctatggagccgcctatgcgctccaggagcttctgaccatcaaa
tcggacgacatcctcggccgtgtgaaggtctacgaggccatcgtcaagggtgagaacatc
caggagccgggcatcccggagtccttcaaggtgctcatcaaggagatgcagtcgctctgc
ctgaacgtggaggtcctctcggcagacgggcaggcggtcagcctgcgcgacgccgacgac
gaggccttccgcgcggcggaagagctcggcatcaacatctcctcccggttcgagtcctcg
tccatcgacgagatctga
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