Leifsonia xyli subsp. cynodontis DSM 46306: O159_02900
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Entry
O159_02900 CDS
T02852
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lxy
Leifsonia xyli subsp. cynodontis DSM 46306
Pathway
lxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O159_02900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxy03019
]
O159_02900
03400 DNA repair and recombination proteins [BR:
lxy03400
]
O159_02900
Enzymes [BR:
lxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
O159_02900
Messenger RNA biogenesis [BR:
lxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O159_02900
DNA repair and recombination proteins [BR:
lxy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
O159_02900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
DprA_WH
Pribosyltran
RecQ_Zn_bind
HTH_Cmi2_C
HEM4
AAA_22
Motif
Other DBs
NCBI-GeneID:
17049706
NCBI-ProteinID:
AGW40514
UniProt:
U3P4Y7
LinkDB
All DBs
Position
249815..251941
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AA seq
708 aa
AA seq
DB search
MTTTGTAFPAASTRARALEHLRDLVGRPDADFHDGQYEAVSALVDERRRALVVQRTGWGK
SAVYFVATLLLRERGAGPAILVSPLLALMRDQVSAAERAGVRALTINSANRHEWEDVIAR
LREDTVDVLLVSPERLNNPEFRDRHLPALVSRAGLLVIDEAHCISDWGHDFRPDYRRLRE
LVAALPTEVPVLATTATANERVVADVAEQLGGSASGRAEVVTIRGPLARRSLRLGVLALP
DATTRLAWLVSNLNALPGSGIVYTLTVSAAEDTARVLRQAGHEAHAYTGQTDTAEREELE
DRLKRNDVKALVATSALGMGFDKPDLGFVVHLGAPSSPVAYYQQVGRAGRATENADVLLL
PGPEDRAIWQYFATASMPSEKKAGTLLAALSDTAQSTQALETRVDLKTSTLELLLKVLDV
DGAVRRVSGGWVSTGRPWAYDRERYERIAAAREAEQRAMIDYERTDGCRMQFLQLALDDP
GARPCGRCDSCAGAWYPEAIADEATGSVSAALNRAGVAVEPRKLWPTGADRLGVPVKGRI
PAGEQVALGRALARLTDLGWGGRLRELLAPDAPDAPCPPDVVEACVAVLSEWGWERRPDV
VVSVPSRRRPVFTASLAQALAEIGRLPSLGALGMRRAGAASGPGGNSAFRLSSVWEAFDA
RELALPAGGVVLLVDDLIDSRWTITVAGRELHRAGASVVLPFAAALRA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccaccggcacagccttccccgccgcatcgacccgcgcccgtgcgctggaacac
ctgcgcgacctcgtgggccggccggacgccgattttcacgacgggcagtacgaggccgtc
tcggcgctggtcgacgagcggcggcgcgccctcgtcgtccagcgcacgggatgggggaag
tcggcggtctatttcgtcgcgacgctcctgctgcgcgagcgcggagccgggccggccatc
ctggtctccccactgctggcgctgatgcgagaccaggtctccgcggccgagcgagccgga
gtgcgggcgctcacgatcaactcggcgaaccggcacgagtgggaggacgtaatcgcccgg
ctccgcgaagacacagtggatgtgctgctcgtctcccccgagcggctcaacaatccggag
ttccgcgaccggcatctgcccgcgctcgtctcgcgggcgggtctgctggtcatcgacgag
gctcattgcatctcggactgggggcacgacttccgccccgactaccgacggctccgggaa
ctcgtggcagcgctccccacggaggtcccggtgctggcgaccaccgcgaccgccaacgag
cgggtcgtggcggatgtcgccgagcagctcggcgggtcggcgtcggggcgggcggaggtg
gtgaccatccgcggcccgctcgcccggcgatccctgcggctgggggtgctcgccctgccc
gatgcgaccacccggctggcctggctggtgagcaatctgaacgcactgcccggaagcggc
atcgtgtacacgctgacggtgtcggccgcggaagacaccgcgcgcgtcctgcgtcaggcc
gggcacgaggcgcacgcctacaccgggcagaccgacacagccgagcgcgaagagttagag
gaccggctcaagcgcaacgacgtgaaagcgctcgtggcgaccagcgcgctcgggatgggc
ttcgacaagccggacctcggattcgtcgtccacctcggggcgccctcctcaccggtggcc
tactatcagcaggtggggcgcgcggggcgcgcgacggagaacgccgacgtgctgctgctg
ccgggcccggaggacagagcgatctggcagtacttcgccaccgcctccatgccgtcggag
aagaaagcgggcacgctgctggcggcgctgagcgacacggcccagtcgacgcaggcgctc
gagacccgagtcgacctgaagacatccacgctcgaactgctgctgaaggtcctggatgtg
gacggagcggtccgccgtgtctccggcggctgggtgtccaccggccggccgtgggcctac
gaccgcgaacgctacgaacgcatcgcggcggcacgcgaggcggagcagcgcgcgatgatc
gactacgaacgcacggacggctgccggatgcagttcctccagctggcgctggacgatccc
ggggcccggccctgcggacgctgcgattcttgcgccggagcctggtatccggaggcgatc
gcggacgaggccaccggatcggtctcagcggccctcaatcgggcgggagtcgccgtggaa
ccacggaagctctggccgacgggcgcagaccgtctcggcgtcccggtgaaaggccgcatc
ccggccggcgaacaggtagcgctgggccgcgcgctcgcccgtctgaccgatctgggatgg
ggcggacgtctgcgggagctcctggctcccgatgccccggacgcaccgtgtccgccagat
gtcgtggaggcgtgcgtcgccgtcctgagcgagtggggatgggagcgccgaccggacgtg
gtcgtctctgtgccttcgcggcggcggccggtgttcacggcctccctggcacaagctctg
gccgagatcggacgtctgccctctctcggggctctcgggatgcgcagggccggcgcggcc
agcggccccggcgggaacagcgctttccggctctccagcgtgtgggaggcgttcgacgcg
cgcgagctggcacttccggcgggtggggtggtgctgctcgtggacgacctgatcgacagc
cgatggacgatcacggtggccggccgcgaactgcaccgggccggggcgagcgtggtgctg
ccgttcgccgcggcgttgcgggcatga
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