Leifsonia xyli subsp. cynodontis DSM 46306: O159_04010
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Entry
O159_04010 CDS
T02852
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lxy
Leifsonia xyli subsp. cynodontis DSM 46306
Pathway
lxy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lxy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O159_04010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lxy03021
]
O159_04010
03400 DNA repair and recombination proteins [BR:
lxy03400
]
O159_04010
Enzymes [BR:
lxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O159_04010
Transcription machinery [BR:
lxy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O159_04010
DNA repair and recombination proteins [BR:
lxy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O159_04010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
DUF1690
Motif
Other DBs
NCBI-GeneID:
17047515
NCBI-ProteinID:
AGW40610
UniProt:
U3P2Q9
LinkDB
All DBs
Position
362300..366175
Genome browser
AA seq
1291 aa
AA seq
DB search
MLDATTFDELRIGLATADDIRRWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVIDVDEEGRHADMPGLENELRLEIKTLSDQRDARVAERLQRLETD
LAALEEEGAKADQKRRVKDTAEKEMGQLRKSFDEDIARLERVWESFRTLKVGDLKPEDAD
FNELVDRFGLYFEAFMGAEAIKRRLQGFDLTQEAELLREQIATGKGQKKIRAIKRLRVVS
SFLATGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVREGAAGEGR
AFASVSEAIMAKDQGSLHLNATVKIRLDNYVPSDAADTGTEPVTAVVETTLGRALFNEAL
PVDYPYVEAVADKGQISAIVNALAERYPKVEVAAALDRIKDAGFYWGTRSGVTVSLSDIL
TPPNKPQIVAGYEKKAAKINSEFEKGLTTDLERRQELVKIWTEATNEVAEAMHANFPADN
TINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLDLPIATVDAEGVLTSDPNVE
NSVFARTLAADAVGTDGTVVAKAGEDVGDVLIDKLVAAGVQDIKVRSVLTCESAVGVCAA
CYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPIAEAAGRIVIEETDKSRKVVLTPDNGDESHVYPVLRRSTLLVEDGQRVEL
GQQLIVGTVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTELLPGELVDRSRYNEINRAALTEGKKTASARQEVMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLIGLKENVIIGKLIPAGTGLSRYRNVSVEATEEAKAERYPNRI
FADDSAFSENDLSFVDFDSFSSDDYTPGTYN
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgcaacaactttcgatgagctgcgtatcggcctggccaccgctgacgacatc
cgtcgctggagctacggcgaggtcaagaagcccgagaccatcaactaccgcaccctgaag
ccggagaaggacggcctcttcggcgagcagatcttcggcccgtcgcgggactgggagtgc
tcgtgcggcaagtacaagcgcgtccgtttcaagggcatcgtgtgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtccgccgcgagcgcatgggccacatcgagctcgccgcgccg
gtcacgcacatctggtacttcaagggtgtgcccagccgtctcggctatctgctcgacatg
gcgcccaaggacctggaaaaggtcatctacttcgccgcctacatggtgatcgacgtggac
gaggagggccgtcacgccgacatgcccggcctcgagaacgagctgcgcctggagatcaag
acgctgtccgaccagcgcgacgcccgcgtcgccgagcgtctgcagcgtctggagaccgac
ctcgccgcgctggaggaggagggcgccaaggccgaccagaagcgccgcgtcaaggacacg
gctgagaaggagatgggccagctccgcaagtccttcgacgaggacatcgcccgcctcgag
cgcgtgtgggagtccttccgcaccctcaaggtcggcgacctcaagccggaggacgcggac
ttcaacgagctcgtcgaccgtttcggcctctacttcgaggcgttcatgggagccgaggcg
atcaagcgccgcttgcagggcttcgatttgacccaggaggccgagctgctccgcgagcag
atcgccaccggaaagggccagaagaagatccgcgcgatcaagcgtctgcgcgtggtctcc
tcgttcctcgcgaccggcaactcgccggccgcgatggtcctcgacgtcgtcccggtcatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgaccagcgacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgtctgcgccgtctgctcgacctc
ggcgctcccgagatcatcgtgaacaacgagaagcggatgctgcaggaggccgtcgacgcc
ctgttcgacaacggccgtcggggtcgccccgtgacgggcaccggcaaccgcgccctcaag
tccctgagcgacatgctcaagggcaagcagggtcgtttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaaaccgttcgtgatcaagcgccta
atcgacctgagccacgctcagaacatcaaggccgccaagcgcatggtggagcgttcgcgc
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccctgtgctgctgaaccgc
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccccagcttgtcgagggcaag
gccattcagctgcacccgctcgtctgcgccgccttcaacgcggacttcgacggcgaccag
atggccgtccacctgccgctgtcggtggaggcccaggccgaggcccgcatcctgatgctc
gcctcgaacaacatcctgaagccgtcggacggccgcccggtcaccctgccgtcgcaggat
atgatcatcggtctgcaccacctcaccaccgtccgcgagggcgccgcgggcgagggccgc
gcgttcgcgtcggtctccgaggcgatcatggcgaaggaccagggcagcctgcacctgaac
gccaccgtcaagatccgcctcgacaactatgtgccgtccgacgcggcggacacggggacc
gagccggtcaccgccgtcgtggagaccacgctgggccgtgccctcttcaacgaggctctg
ccggtggactacccttacgtggaggccgtcgccgacaaggggcagatctccgcgatcgtc
aacgccctggcggagcgctaccccaaggtggaggtggccgcggcgctcgaccggatcaag
gacgccggtttctactggggcacccgctccggtgtgacggtgtcgctgagcgacatcctg
acgccgccgaacaagccgcagatcgtcgcgggctacgagaagaaggctgccaagatcaac
tcggagttcgagaagggcctcacgaccgacctcgagcgccgtcaggagctggtgaagatc
tggaccgaggccaccaacgaggtcgccgaggccatgcacgccaacttcccggccgacaac
accatcaaccgcatggtcacctcgggcgcccgtggcaactggctgcaggtgcgcaacatc
gccggtatgcgcggtctggtgaacaacccgaagggtgagatcatcccccgtccgatcatc
tcctcgtaccgcgaggggctgtcggtggcggagtacttcatcgcgacgcacggcgcccgc
aagggtctggccgacacggctctccgtacggcggactcgggctatctgacccgtcgtctg
gtggacgtctcgcaggatgtcatcatccgggaggacgactgcggcacgaccaagggcctc
gacctgccgatcgcgaccgtcgacgccgaaggcgtgctcacgagcgacccgaacgtcgag
aactcggtgttcgcccggacgctcgccgccgacgcggtgggcaccgacggcaccgtggtc
gcgaaggccggcgaggacgtgggcgatgtgctcatcgacaagctcgtcgcggccggcgtg
caggacatcaaggtgcgctccgtgctcacctgcgagtccgcggtcggcgtctgcgccgcc
tgctacggtcgctcgctcgcgaccggcaagctggtcgacatcggcgaggccgtcggcatc
atcgcggcccagtcgatcggtgagcccggcacgcagctgacgatgcggaccttccacacc
ggtggttcagcctccgcggacgacatcacccagggtctgccgcgcgtgcaggagctgttc
gaggcccgcacccccaagggtgcgtccccgatcgccgaggccgccggccgcatcgtcatc
gaggagacggacaagtcccgcaaggtcgtcctgacccccgacaacggcgacgagtcgcat
gtctaccccgtgctgcgccgttcgaccctcctggtggaggacggacagcgcgtcgagctc
ggccagcagctgatcgtcggcaccgtcgacccgaaggaggtcctccgggtcaagggcgtc
cgcgaggtgcagaagcacctggtgggcggcgtgcaaggcgtctaccgctcgcagggtgtg
ccgatccacgacaagcacatcgaggtcatcgtccgccagatgctccgcaaggtcaccgtc
gtcgaccacggcgacaccgagctgctgccgggtgagctcgtcgaccgctcgcggtacaac
gagatcaaccgcgctgcgctgaccgagggcaagaagacggcgtccgcccgtcaggaggtc
atgggcatcaccaaggcctcgctggcgaccgagtcgtggctgtcggccgcgtccttccag
gagaccacccgcgtcctgacgcaggcggccatggagggcaagtccgatccgctgatcggt
ctcaaggagaacgtcatcatcggtaagctcatcccggccggcaccggcctgtcgcgctac
cgcaacgtctccgtcgaggcgaccgaggaggcaaaggccgagcggtaccccaaccgcatc
ttcgccgacgactccgccttcagcgagaacgacctgagcttcgtcgatttcgacagcttc
agctcggacgactacaccccgggcacctacaactaa
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