Leifsonia xyli subsp. cynodontis DSM 46306: O159_07160
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Entry
O159_07160 CDS
T02852
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lxy
Leifsonia xyli subsp. cynodontis DSM 46306
Brite
KEGG Orthology (KO) [BR:
lxy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxy03019
]
O159_07160
Enzymes [BR:
lxy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
O159_07160
Messenger RNA biogenesis [BR:
lxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
O159_07160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
nSTAND3
AAA_30
AAA_16
T2SSE
HA2_N
NACHT
SLFN-g3_helicase
PhoH
ResIII
AAA_23
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
17047795
NCBI-ProteinID:
AGW40890
UniProt:
U3P3M4
LinkDB
All DBs
Position
complement(671805..675680)
Genome browser
AA seq
1291 aa
AA seq
DB search
MPSPAALPRIVFPPELPVSQKREDIARAIRENQVVIVAGETGSGKTTQLPKICLELGRES
IGHTQPRRIAARTIAERVAEELGQTVGELVGYQVRFTDRVSAATRIKLMTDGILLNEIHR
DRLLRKYDTIIIDEAHERSLNIDFLLGYLRELLPKRPDLKVVITSATIDPESFAAHFAAP
DGSPAPIVEVSGRTFPVEVRFRPLVAEALDDEDDPDPVPSADRDYLQGINDALDELARES
PGDVLVFLSGENEIRDAADAIRGRNLPGTEVLPLYGRLSATEQHRVFQPSSTPGVRRRVV
LATNVAETSLTVPGIKYVVDAGTARISRYSTRAKVQRLPIEAVSQASANQRSGRSGRTSD
GIAIRLYSQEDFEKRPKFTEPEILRTNLAAVILQMISLGLGDVAAFPFLTPPDSRGIKDG
LDLLTELGAVTAARGGDPALTKVGRSLSLLPIDPRFARMVVESKRHGTSGEVMAIVAGLT
IQDPRERPVEKRGSADEKHARFADPTSDFLTLLNLWNYLEEEQKELSSSAFRRLCKAEYL
NFLRVREWQDVYRQLRQLAKPLGLTIGEASVNPDGIHRSLLAGLLSHIGLKDLRESGNKG
GARTRQSEYLGARQARFVIFPGSTLAKKQPNAIMSAELVETSRLFARMNAGVDPAWAEPI
AGELCKRQYSEPHWEKSQGAAVAYEKVTLYGVPIVPRRRIPYSRIDAGLARELFIRHALV
DDEWDSHQAFERANRKLRAELREREERTRRRGLLNDEAVFEFYDRRLPAEVVSTRSFEGW
WKKARHETPELLTMTQEALLDEDAAAVDDDAFPPVWRQGDQRLTLRYRFEPGAEDDGVTV
QVPLPLLAGLLPDGFDWQVPGLRHELVTALIKSLPKTIRRQVVPAADWAKRLLGELGGTA
GMRAHEGERPAASLPDTVAAAISRLTGSRVSGSDFDRERLPAHLRPTFVVVGERGRPLAS
GKSLPELQERLRSRARLGDARRRGADPERHRAVGADELGPGRASPLPRHGPAGTGRGDEH
DPRLPLARGRRGERQRPAHVHSRRPGEDPPRRGAPAAAREHPVARGLRAAAPDREREADP
GSEPLPEHQGAVRRQPARGDRFRAVPHETGRAAVHARRVRGGPRPRLRRRDGLPVRDSRP
RHAHPDRRPRRRESDRRDDRARLPAGAERHARAARRARLSGIRLRDGSGAAAEPPPLPRR
DHPAAASPAHQPRPRPRVADPGGDRRRAVRRRRRAHPARTRCAREPRPRPLDARGVPRVT
VRPVPRHRRDRVAPAHPQGAHRLSIAGRPVC
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccccgccgctctcccccgcatcgtcttcccgccggagctgcccgtcagccag
aagcgggaggacatcgcgcgcgcgatccgggagaaccaggtcgtgatcgtcgcgggcgag
accggttcgggcaagacgacgcagctgccgaagatctgcctggaactcgggcgagagtcc
atcggccacacgcagccacggcggatcgccgcgcgcacgatcgcggagcgcgtcgcggag
gagctggggcagacggtcggcgagctggtcggctatcaggtgcgcttcaccgaccgggtc
tcggcggcgacgcgcatcaagctgatgacggacggcatcctgttgaacgagatccaccgc
gaccggctgctgcggaagtacgatacgatcatcatcgatgaggcgcacgagcgcagcctc
aacatcgacttcctgctcgggtacctgcgcgagctgctgccgaagcgtcccgatctcaag
gtcgtcatcacctcggcgacgatcgacccggagagcttcgccgcgcacttcgccgccccg
gacgggtcgcccgcgccgatcgtcgaggtctccgggcgcacgttcccggtcgaggtccgc
ttccgccccctcgtggccgaggcgctcgacgacgaagacgatcccgacccggtcccctcc
gccgaccgcgactacctccagggcatcaacgacgccctcgacgagctcgcccgcgagtcc
cccggcgacgtgctcgtgttcctctcgggcgagaacgagattcgggatgccgccgacgcc
atccgcggccgcaacctccccggcaccgaggtgctgcccctgtacggacgcctctccgcc
accgagcagcaccgggtgttccagccgtcctcgacgcccggcgtccggcgccgcgtcgtg
ctcgccaccaatgtcgccgagaccagcctcacggtcccgggcatcaagtacgtggtggat
gcgggaaccgcccgcatcagccgctacagcacgcgcgccaaggtgcagcgcctcccgatc
gaggcggtctcgcaggccagcgccaaccagcgctcgggccggtcgggccgcaccagtgac
ggcatcgccatccgcctctactcgcaggaggacttcgagaagcgtcccaagttcaccgag
ccggagatcctgcgaacgaacctcgccgcggtcatcctgcagatgatctccctcggcctc
ggcgacgtcgccgccttccccttcctcaccccgccggactcgcgcggcatcaaggacggc
ctggatctgctgacggagctgggcgcggtcaccgccgcgcgcggcggcgacccggcgctc
acgaaggtgggccgctcgctctcgctgctgccgatcgacccgcgcttcgcccgcatggtc
gtcgagtcgaaacggcacggcacctccggcgaggtgatggcgatcgtcgccggcctcacc
atccaggacccgcgcgagcgcccggtcgagaagcgcggcagtgccgacgagaagcacgcg
cgcttcgccgacccgaccagcgacttcctcaccctgctcaatctctggaactacctggag
gaggagcagaaggagctctcctcgagcgcgttccgccgactgtgcaaggccgagtacctc
aacttcctccgcgtgcgcgaatggcaggacgtctaccgtcagctccgccaactcgccaag
ccgctcgggctgacgatcggcgaggcgtcggtgaacccggacggcatccaccgctcgctg
ctcgccgggctgctctcgcacatcgggttgaaggacctgcgcgagagcggcaacaagggc
ggcgcgcgcacgcgccagtccgaatacctcggcgcccgccaggcccgcttcgtgatcttc
cccggctcgacgctcgcgaagaagcagccgaacgcgatcatgtcggcggagctggtcgag
acctcccggctgttcgctcgcatgaacgcaggcgtagaccctgcctgggccgagccgatc
gccggcgagctgtgcaaacggcagtacagcgagccgcactgggagaagagccaaggcgcg
gcggtcgcgtacgagaaggtgacgctgtacggggttccgatcgtcccgcgccgccgtatc
ccgtactcccgcatcgacgccgggctcgcgcgcgagctgttcatccggcacgccctggtc
gacgacgagtgggactcgcaccaggcgttcgagcgcgccaaccggaagctgcgagccgag
ctgcgcgaacgggaggagcggacccgccgccgcggcctcctgaacgacgaggcggtgttc
gagttctacgaccgccgtctccccgccgaagtcgtctccacgcggtcgttcgaaggctgg
tggaagaaagcgcggcacgagacgccagagctgctcacgatgacgcaggaagcgctgctc
gacgaggacgccgccgctgtggacgacgacgccttcccgcccgtgtggcggcagggcgac
cagcggctcaccctccgctaccgcttcgagccgggcgcggaagacgacggcgtcaccgtg
caagtacccctgccgctgctcgcgggcctcctccccgacggcttcgactggcaggttccg
gggctccgccacgaactcgtcacagcgctcatcaagtcgctgccgaagacgatccgccgc
caggtcgtcccggccgccgactgggccaagcgcctgctcggcgagctgggcggcacagcc
gggatgcgcgcgcacgagggcgagcggcccgccgcctccctccccgacaccgtggccgcg
gcgatctcgcggctgaccggttcacgggtcagcggcagcgacttcgaccgcgagcgcctg
cccgcccacctccggcccaccttcgtggtcgtcggcgagcgcggccggccgctggcgagc
gggaaatcgcttcccgagttgcaggagcgactgcgctcgcgcgcgcgactcggtgacgcg
cgtcgcagaggcgcggaccccgaacgccatcgagcggtcggggctgacgagctgggacct
ggacgagcttccccgcttcctcgacacggcccagcggggaccgggcggggcgacgaacac
gatccgcgcctacccctcgctcgtggacgacggggcgagcgtcagcgtccggctcatgtc
cactcccgccgaccaggcgaggaccctccccggcggggtgcgccggctgctgctcgcgag
catcccgtcgcccgtggcctacgtgcagcagcacctgaccgcgaacgagaagctgaccct
ggcagcgagcccttacccgagcaccaaggcgctgttcgacgacagcctgctcgcggtgat
cgattccgtgctgtaccgcatgagaccggacgggcagctgttcatgcgcgccgagttcga
ggcggtccgcgaccgcgtctccggcgtcgtgatggactccctgttcgagacagtcgccct
cgtcacgcgcatcctgaccgccgcccgcgccgccgagaaagcgatcgccgggacgaccgc
gctcgcctacctgccggcgctgaacgacatgcgcgggcagctcgccgggctcgtctgtcc
gggattcgtctccgcgacgggtctggagcggctgccgaacctcccccgctacctcgccgg
gatcacccagcggctgcaagccctgcccaccaaccccggccgcgaccgcgcgtggcagac
ccaggtggagaccgccgtcgcgctgtacgccgacgccggcgggcgcatcccgcccgcacc
cggtgcgcccgcgaacctcgtccacgcccgctggatgctcgaggagttccgcgtgtcact
gttcgcccagtccctcggcaccgccgagaccgtgtcgctccagcgcatccgcaaggcgct
caccggctgagcatcgccggccgcccggtatgctga
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