Leifsonia xyli subsp. cynodontis DSM 46306: O159_08550
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Entry
O159_08550 CDS
T02852
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lxy
Leifsonia xyli subsp. cynodontis DSM 46306
Pathway
lxy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lxy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O159_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lxy03019
]
O159_08550
03016 Transfer RNA biogenesis [BR:
lxy03016
]
O159_08550
Enzymes [BR:
lxy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
O159_08550
Messenger RNA biogenesis [BR:
lxy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
O159_08550
Transfer RNA biogenesis [BR:
lxy03016
]
Prokaryotic type
tRNA degradation factors
O159_08550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_KhpA-B
RNase_PH_C
CdsD_C
KH_PNO1_2nd
KH_NusA_1st
KH_2
Motif
Other DBs
NCBI-GeneID:
17047908
NCBI-ProteinID:
AGW41003
UniProt:
U3PBX4
LinkDB
All DBs
Position
803127..805421
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AA seq
764 aa
AA seq
DB search
MEGPEITFAEAVLDNGRFGTRTVRFETGRLAQQAQGAVAAYLDEETMLLSATSASKHPKD
NFDFFPLTVDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVDGLRNEVQ
IVITVLSIAPDEFYDALAINAASASTQISGLPFSGPVAGVRLALIPGNGQHEDQWIAFPK
ASQLEEAVFDLVVAGRVLTNEDGTEGDVAIMMVEAEATEGSWNLIQGGAVKPNEEVVAQG
LEAAKPFIRQLVGAQAALAKQSAKAIADYPVFLHYSQEAYDSVAALAYDELVNVYQIADK
VERQNADDALKERVKAALAEKVEAGALDAEALTQFSAAYKSVSKVVMRGRVLREGVRIDG
RGLTDIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTKKRYLH
HYNFPPYSTGETGRVGSPKRREIGHGFLAERALVPVLPSREEFPYAIRQVSEALSSNGST
SMGSVCASTLSLLNAGVPLRAPVAGIAMGLISDVVDGETRYAALTDILGAEDALGDMDFK
VAGTSEFVTAIQLDTKLDGIPSSVLASALKQAKDARTTILSVLDAAIDAPDEMAPTAPRV
ISVQIPVDKIGELIGPKGKTINAIQDETGADISIEEDGTVYIGAVDGPSAEAARAQVNAI
ANPTNPEVGEQFLGTVVKNAAFGAFVSLLPGKDGLLHISEVRKLAGGKRVESVDDVLSIG
QKILVEITKIDDRGKLSLAPVLADEAETHGRDAASEGPEAPAEG
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttggaaggtcccgaaatcacattcgccgaagccgtgctcgacaatggccgcttcggcacc
cgcaccgtccggttcgagaccgggcgactcgctcagcaggcgcagggcgccgtcgccgcc
tacctcgacgaggagaccatgctgctgagcgcgacgagcgccagcaagcacccgaaggac
aacttcgacttctttccactgaccgtcgacgtggaggagcgttcctacgcggccggcaag
atccccggttcgttcttccgccgtgagggccgcccgtcgaccgaggccatcctggtctgc
cgcctgatcgaccgcccgctgcgtccgtcgttcgtcgacggcctccgcaacgaggtccag
atcgtcatcaccgtcctcagcatcgcgccggacgagttctacgacgccctggcgatcaac
gcggccagcgcgtccacgcagatctccggtctaccgttctccggacccgtggcgggtgtg
cgccttgcgctcatccccggcaacggccagcacgaagaccagtggatcgccttcccgaag
gcctcgcagctggaggaggccgtgttcgacctcgtcgtggccggacgggtgctgaccaac
gaggacggcaccgagggcgacgtcgcgatcatgatggtcgaggcggaggccaccgagggc
agctggaacctcatccagggcggcgctgtgaagccgaacgaggaggtcgtcgcccagggc
ctggaggcggccaagccgttcatccgccagctcgtcggcgcccaggcggccctcgcgaag
cagtccgcgaaggcgatcgccgactacccggtgttcctgcactactcgcaggaggcctac
gacagcgtcgccgctctggcctacgacgaactcgtgaacgtctaccagatcgccgacaag
gtcgagcgtcagaacgcggacgacgccctcaaggagcgggtcaaggccgccctcgccgag
aaggtggaggccggcgcgctcgacgccgaggcgctcacgcagttctcggcggcgtacaag
tccgtctcgaaggtcgtcatgcgcggccgcgtcctccgcgagggcgttcgcatcgacggc
cgcggcctgaccgacatccgcccgctcgacgccgaggtgcaggtcatcccgcgcgtccac
ggctcggcgatcttccagcgcggcgagacccagatcctgggcgtcaccaccctgaacatg
ctcaaaatggagcagcagatcgactcgctctcgccggtcaccaagaagcgctacctgcac
cactacaacttcccgccgtactcgaccggtgagaccggtcgcgtcggctccccgaagcgt
cgcgagatcgggcacggcttcctcgccgagcgtgcgctggttccggtgctgccgagccgc
gaggagttcccgtacgcgatccgtcaggtctccgaggcgctgagctccaacggctcgacc
tcgatgggctcggtctgcgcgtccaccctgtcgctgctgaacgccggtgtgccgctgcgc
gccccggtcgccggcatcgccatgggcctgatctccgacgtcgtcgacggtgagacccgc
tacgcggcgctgaccgacatcctgggcgcggaggacgcgctcggcgacatggacttcaaa
gtcgccggcaccagcgagttcgtcactgccatccagctcgacacgaagctcgacggcatc
ccgtcgtcggtgctcgccagcgccctgaagcaggcgaaagacgcccgcaccacgatcctg
agcgtgctcgacgccgcgatcgacgccccggacgagatggccccgactgcgccgcgcgtg
atctcggtccaaatcccggtcgacaagatcggcgagctgatcggcccgaagggcaagacg
atcaacgccatccaagacgagaccggcgccgacatctccatcgaggaggacggcaccgtc
tacatcggcgctgtcgacggcccctcggccgaggcggcccgcgcccaggtgaacgcgatc
gcgaaccccaccaacccggaggtcggcgagcagttcctcggaaccgtcgtcaagaacgcc
gcgttcggtgcgttcgtctcgctcctgccgggcaaggacggcctgctgcacatctccgag
gtgcgcaagctggccggcggcaagcgtgtggagagcgtcgacgacgtcctcagcatcggg
cagaagatcctggtggagatcaccaagatcgacgaccgtggcaagctctcgctcgccccg
gtgctcgccgacgaggccgagacgcacggccgcgacgccgccagcgagggtcctgaggct
cccgccgaaggctga
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