Lysobacter yananisis: RDV84_03250
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Entry
RDV84_03250 CDS
T09342
Name
(GenBank) serine hydrolase
KO
K18988
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase [EC:
3.4.16.4
3.4.21.-]
Organism
lya
Lysobacter yananisis
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lya01002
]
RDV84_03250
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
lya01011
]
RDV84_03250
Enzymes [BR:
lya01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RDV84_03250
Peptidases and inhibitors [BR:
lya01002
]
Serine peptidases
Family S12: D-Ala-D-Ala carboxypeptidase B family
RDV84_03250
Peptidoglycan biosynthesis and degradation proteins [BR:
lya01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RDV84_03250
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-lactamase
DUF3471
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
WMT03875
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Position
complement(749989..751737)
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AA seq
582 aa
AA seq
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MNPSRPLRPLLAGAALAAALAAAAPAIAAPAQSAAADEGSSSALAAALRARLDGDRSGAC
WAAALIDGERVQRAFACVDPRQAARIGPDAAFEIGSISKTMTAALLAELIRAGRASLDDP
LADYLPAGARVPAFEGRPIRLRDVVTHRSGLPALPPGVALDPADPYARLDIATLVGALAK
VELSAPPGRDFAYSNYAMMLLSYAVAHRAGTDYETLLRQGLLQPLGMRGAYVDRAPEGVR
AVAGRLPNGQATPAWRFGADLAGVGGVRATLDDMVRYAQAGLAREAAPGEDAIAAVQRTL
QPLPGQPPMGMNWMLLEHGGRTLAEHAGGTGGFSSYLALDRARGRAVVLLSDTSLSATGG
LAGFGRHLLDPDFPAERARKAATPDAAVLDGLAGDYSLAGLPTTLRRRGGALTVQAQGQP
EFELGYDDHGDFYPLQFDALLRPLRGADGRYGFVWNQGGGSVAAQRSAPAATSAPAEAGS
SKAVPSKAASAKAAPAPATQRLGDFVGDYPLAPGFVLSIGERDGALYAQATGQGALRLIA
DGADRFRTEGVDARIAFERGGDGKIAGLTLHQNGQAIHAPRR
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgtcccgccccctgcgtcccctcctggccggcgccgccctcgcggcggccctg
gccgccgccgctcccgccatcgccgcgccggcccagtccgccgccgccgatgaagggtcg
tcgtccgcgctcgccgccgcgctgcgcgcccgcctcgacggcgaccgcagcggcgcctgc
tgggccgcggcgctgatcgacggcgagcgcgtgcagcgcgccttcgcctgcgtcgatccg
cgacaggccgcgcgcatcggcccggatgccgcgttcgagatcggctcgatcagcaagacc
atgaccgcggcgctgctggccgaactgatccgcgccggccgcgcctcgctcgacgatccg
ctggccgattacctgccggccggcgcgcgcgtgccggcgttcgaaggccggccgatccgc
ctgcgcgacgtggtcacccaccgctccgggttgcccgcgctgccgccgggcgtggcgctg
gacccggccgatccctacgcccggctcgacatcgccacgctggtcggcgcgctcgcgaag
gtcgagctcagcgcgccgccgggccgcgacttcgcctattccaactacgcgatgatgctg
ctgtcctacgcggtcgcgcaccgcgccggaaccgactacgaaaccctgctgcggcaaggc
ctgctgcagccgttgggcatgcgcggcgcctacgtggaccgcgcgcccgagggcgtgcgc
gcggtcgccggccggctgcccaacggccaggccacgccggcctggcgcttcggcgccgac
ctggccggcgtcggcggggtgcgcgccaccctcgacgacatggtccgctacgcccaggcc
gggctggcgcgcgaggcggcgcccggcgaggacgccatcgccgccgtgcagcggaccctg
caaccgttgccgggccagccgccgatggggatgaactggatgctgctggaacacggcggc
cgcaccctggccgaacacgccggcggcaccggcggcttctcgtcctacctcgccctggac
cgcgcgcgcggccgcgccgtggtgctgctgtcggacacctcgctgagcgcgaccggcggg
ttggccgggttcggccgccatctgctcgacccggacttccccgccgagcgcgcgcgcaag
gcggccacgccggatgcggccgtgctcgacggcttggccggcgactactcgctggccggc
ttgccgaccacgctgcgccggcgcggcggcgcgctgaccgtgcaggcgcaggggcagccc
gagttcgagttgggctacgacgaccacggcgatttctacccgctgcagttcgatgcgctg
ctgcgcccgctgcgcggcgccgatggccgctacggcttcgtgtggaaccagggcggcggc
agcgtggcggcgcagcgcagcgcgccggccgccacgtcggcgcccgccgaagccggatct
tccaaagccgtgccctccaaagccgcctccgccaaagccgctccggccccggccacgcag
cgcctgggcgatttcgtcggcgactacccgctggcgccgggcttcgtgctgagcatcggc
gaacgcgacggcgcgctgtacgcgcaggccaccggccagggggcgctgcgcctgatcgcc
gacggcgccgaccgcttccgcaccgaaggcgtggacgcgcggatcgcgttcgaacgcggc
ggcgatggcaagatcgccggactgaccctgcaccagaacggacaagcgattcatgccccg
cgccgctga
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