Lysobacter yananisis: RDV84_06775
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Entry
RDV84_06775 CDS
T09342
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lya
Lysobacter yananisis
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lya03019
]
RDV84_06775 (hrpB)
Enzymes [BR:
lya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RDV84_06775 (hrpB)
Messenger RNA biogenesis [BR:
lya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RDV84_06775 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WMT04528
LinkDB
All DBs
Position
complement(1591600..1594146)
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AA seq
848 aa
AA seq
DB search
MNTPAFPIDPLLPQIRASLAAHPRLVLEAPPGAGKTTQVPPALLDAPWLDGRRIVMLEPR
RVAARAAAHFMARQRGEAAGDTVGYRIRFENKVGPRTRIEVVTEGILTRMIQDDPTLEGV
GALLFDEFHERHLAADLGLALALDVQSSLREDLRIVVMSATLDGERLAQFLDAPRLSSAG
RSHPVQIGHYPARREETLEHQLRRAVEHALAAHPGDVLAFLPGQREIARADAALAASEAA
RGVDVLALYGELPVEQQSRVLQPDPDGRRRVVLATNVAESSVTLPGVRVVIDSGLAREPR
YDPNSGFARLDVVAIAQASADQRAGRAGRVADGWAYRLWPQSQRLEPQRRPEMAQVELAG
LALELAAWGDAGLRFLDPPPPGAMGAARELLLRLGALEPGAGAQPAITAFGRRMLALGTH
PRLAAMLLAPRDAGERALACDLAALLEARDPLRSGGDALHARWQALAAFRAGRAPAEASR
SALAALDQASKQWRRRLRVDASPPVSAPAHRLGDLLLHAFPDRIARQHPADPYRYQLANG
RSAKLFDDSAVYGEPWLAISELRDDPRDARILRAAPLDSARLEREFPQRFVSEDRVVWDA
GARAIAAVRERRFDRIVIDSRALARPDPARYADALVDAVRQLGLDALPWTPGLRQWRARV
RCLREWMPELAQGEAPLPDLSDAALLERLDAWLKPALSGKSRLDALDEAAFGDALRSLCD
WSWRQKLDALAPTRIVVPSGMERTIEYGYDDHADDGRGAAQAPVLAVKLQELFGLADTPR
IGDGRVPLTLHLLSPAGRPLQVTQDLRGFWERTYPEVKKEMKGRYPKHPWPDDPWTAKAT
HRAKPRGT
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
gtgaacacgcccgccttccccatcgatccgctgttgccgcagatccgcgccagcctcgcc
gcccatccgcgcctggtgctggaagcgccgcccggtgccggcaagaccacccaggtgccg
ccggcgctgctcgacgcgccgtggctggacgggcgccggatcgtgatgctggagccgcgc
cgcgtggccgcgcgcgccgcggcccacttcatggcgcgccagcgcggcgaggccgccggc
gacaccgtcggctatcgcatccgcttcgagaacaaggtcggcccgcgcacccgcatcgag
gtggtcaccgaaggcatcctgacccggatgatccaggacgaccccacgctcgaaggcgtc
ggcgcgctgctgttcgacgaattccacgaacgccacctcgccgccgacctcggcctggcg
ctggcgctggacgtgcagtcctcgctgcgcgaagacctgcgcatcgtggtgatgtcggcc
accctcgacggcgagcggctggcgcagttcctcgacgcgccgcgattgagcagcgccggg
cgcagccatccggtgcagatcgggcactacccggcgcggcgcgaggagacgctcgaacac
cagctcaggcgcgcggtcgagcacgcgctggccgcgcaccccggcgacgtgctcgcgttc
ctgcccggccagcgcgagatcgcccgcgccgacgccgcgctggccgccagcgaggccgcg
cgcggcgtcgacgtgctggccctgtacggcgaactgccggtggagcaacagagccgcgtg
ctgcagcccgaccccgacggccgccgacgggtggtgctggcgaccaacgtcgccgaatcc
agcgtgaccctgcccggcgtgcgcgtggtgatcgactcgggcctggcgcgcgagccgcgc
tacgatcccaacagcggcttcgcccgcctcgacgtggtcgccatcgcccaggcctcggcc
gaccagcgcgcgggccgcgccggccgcgtcgccgacggctgggcatatcggctgtggccg
caatcgcagcggctggagccgcagcggcggccggaaatggcccaggtcgaactggccggt
ctggcgctggaactggccgcctggggcgatgccggcctgcgcttcctcgacccgccgccg
cccggcgcgatgggcgcggcgcgcgaactgctgctgcgcctgggcgcgctggaacccggc
gccggcgcgcaaccggcgatcaccgcgttcggccggcgcatgctcgcgctgggcacgcat
ccgcgcctggcggcgatgctgttggcgccgcgcgacgccggcgagcgcgccctggcctgc
gacctggccgcgttgctggaggcgcgcgacccgctgcgcagcggcggcgacgcgctgcac
gcgcgctggcaggcgctggccgcgttccgcgccggccgcgcgccggccgaggcctcgcgc
tcggcgctggccgcgctcgaccaggccagcaagcaatggcgccggcgcctgcgcgtggac
gcgtcgccgccggtctcggcgccggcgcatcggctcggcgacctgctgctgcacgcgttt
cccgaccgcatcgcgcgccagcatcccgccgacccctaccgctaccaactcgccaacggc
cgcagcgccaagctgttcgacgacagcgcggtctacggcgagccgtggctggcgatcagc
gaactgcgcgacgacccgcgcgacgcgcgcatcctgcgcgccgcgccgctcgactcggcg
cggctggagcgcgaattcccgcagcgcttcgtcagcgaagaccgggtggtgtgggacgcc
ggcgcgcgcgcgatcgcggcggtgcgcgagcgccgcttcgaccgcatcgtgatcgacagt
cgcgcactggcgcggcccgacccggcgcgctacgccgacgccctggtcgacgcggtgcgc
cagctcggcctggacgcgttgccgtggacgccgggcctgcgccagtggcgcgcgcgggtg
cgctgcctgcgcgaatggatgcccgagctcgcacagggcgaggcgccgctgccggacttg
tccgacgcggccttgctggaacgcctggacgcatggctcaagcccgcgctcagcggcaag
agccggctcgacgcgctcgacgaagcggccttcggcgatgcgctgcgttcgctgtgcgat
tggtcgtggcggcagaaactcgacgcgctcgcgccgacccgcatcgtggtgccctcgggc
atggaacggacgatcgagtacggctacgacgaccacgccgacgacggccgcggcgccgcg
caggcgccggtgctggcggtgaaactgcaggagctgttcggcctcgccgacaccccgcgc
atcggcgacggccgcgtgccgctgaccctgcacctgctctcgcccgccggccggcccttg
caggtgacccaggacttgcgcggcttctgggagcgcacctacccggaagtgaagaaggaa
atgaaaggccgctatcccaagcacccgtggcccgacgatccgtggacggcgaaagccacg
caccgggccaagccgcgcggcacctga
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