Lysobacter yananisis: RDV84_07370
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Entry
RDV84_07370 CDS
T09342
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
lya
Lysobacter yananisis
Pathway
lya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RDV84_07370 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_07370 (recB)
Enzymes [BR:
lya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RDV84_07370 (recB)
DNA repair and recombination proteins [BR:
lya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RDV84_07370 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
WMT04646
UniProt:
A0AA51SJ33
LinkDB
All DBs
Position
1729860..1733495
Genome browser
AA seq
1211 aa
AA seq
DB search
MSAPESSKHESVKHGPAARDPFLDLPLDGLRLIEASAGTGKTYTLATLVARLVIERGLGV
SRILAVTFTDAATQELRERLRRRLLLAARIAADDPALAEADDDAERALTRALVRAQADIE
GEAALRARLQRAAREIDLAAVVTIHGFCARVLAEHALETGQPFAAPELIGSERELLDEIA
VDLWRAFGNDAGEAELLALQWPGGPPSLAADLGALLRTPLLLPAAPASSQDPLAELDRAG
AALRDAFAAHADDAFAALAAAIAGKALNGNSYRAHLPDELRAQLRAWCANGDWSQPLDER
AAKLAPSALASKANKGKEAQVPASPLFDAVARYLDAAQQREQWLAGQRLALAHRIRAAAA
QRLAELKRVRRVQSFDDLIADVASALEGPHGEALARRLREQYAVALVDEFQDTDPRQWAI
FRRVFGEAAREGDSPAGAGLFLIGDPKQAIYGFRGGDVHTYLAAAAQAEAAPPLDHNFRS
RPSLLRAIAALYAQAGEAAFIDPRIRFREVEAGGAVADEDLQRDGATAPALILRALPAPD
DGRKTSVWSSPESRELAARACIAAIHGWLADARDGRATIQGRPLRPADIAVLVRSHEEAA
SIQRALAAAGIAAVAAGRRSLFATEQAMETLTLFDALLHPGDSGRLRAALATPLLGLDGA
AVARVAADEAEQARWQAQALQWRERWQRHGPLALLADLCAQQAPRLLALGDGERRLTNLL
QLAETLQEADRRALGLHGLRDWLRLRIAEADDSDEKQQLRLESDAHRVQILTLHKSKGLE
FGLVFLPFVALGREPRSGRWCEYPDPEHGRVMQLQSDVFDPDAPQWQDASERAAQEARAE
DARLLYVGLTRARHALWIAIGPLYHAALSPLQPMLADPAALAREPGVAIDAAAIEPPPRP
LPPAAAGAVPPAREARARAARDWWVYSFTQLTNEDSGFDPAAQDERGAEDEPQAAPDLVV
AAPLPGDARFGGSRFGNVVHSALERVDFAAWRDWRDGDAPPPGQDEALAAAMRSEGYAEA
DIDDGLALLASLVGRTLVAPLPEGARLCDVPEPARRSEMEFHFGLDAAPVDALLAVLHAH
GQVRERRGFGSRRRLEGLMTGKIDLVYAHEGRYYVLDYKTNRLPGFDAAQVERAMAESEY
DLQSLIYTVALHRWLRFRLGPDYDYERDFGGVRYLFCRGLDAADPGAGVHAAKPPRALIE
AMDALFAGAAR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcccgaatcctccaagcacgaatccgtcaagcacggacccgccgcgcgcgat
cccttcctcgacctgccgctcgacggcctgcgcctgatcgaggccagcgccggcaccggc
aagacctacaccctggccacgctggtggcgcggctggtgatcgagcgcggcctcggcgtg
agccggatcctggcggtgaccttcaccgacgcggcgacccaggaactgcgcgaacgcctg
cgccggcgcctgctgctggccgcgcgcatcgccgcggacgatcccgcgctggccgaagcc
gacgacgatgccgagcgcgcgctgacccgcgcgctggtgcgcgcgcaggccgacatcgaa
ggcgaagcggcgctgcgcgcgcggctgcagcgcgccgcgcgcgagatcgacctggccgcg
gtggtcaccatccacggcttctgcgcgcgcgtgctcgccgagcacgcgctggaaaccggc
cagccgttcgccgcgcccgagttgatcggcagcgaacgcgaactgctcgacgagatcgcg
gtggacctgtggcgcgcgttcggcaacgacgccggcgaagccgaactgctggcgttgcaa
tggccgggcgggccgccgtcgctggccgccgacctgggcgcgctgctgcgcacgccgctg
ctgctgccggccgcgccggcttcgagccaggacccgctggccgaactcgaccgcgccggc
gccgcgctgcgcgacgcgttcgccgcgcacgccgacgatgccttcgccgcgctggccgcg
gccatcgccggcaaggcgctcaacggcaacagctaccgcgcccatctgcccgacgaactg
cgcgcgcagttgcgggcctggtgcgccaacggcgactggtcgcagccgctggacgagcgc
gcggccaagctcgcgccgtccgcgctggcgtcgaaagccaacaagggcaaggaagcgcag
gtgccggcctcgccgctgttcgacgcggtcgcgcgctacctcgacgccgcgcagcagcgc
gagcagtggctggcggggcagcgcctggcgctggcgcaccgcatccgcgcggcggcggcg
cagcgcctggccgagctcaagcgcgtgcggcgggtgcagagcttcgacgacctcatcgcc
gatgtcgccagcgcgctggaggggccgcacggcgaggcgctggcgcggcgcctgcgcgag
cagtacgcggtggccctggtcgacgagttccaggacaccgatccgcgccagtgggcgatc
ttccgccgggtgttcggcgaagccgcgcgcgagggcgattcgcccgcgggcgccgggctg
ttcctgatcggcgaccccaagcaggccatctacggcttccgcggcggcgacgtgcatacc
tatctggccgccgccgcgcaggccgaggcggcgccgccgctggaccacaacttccgctcg
cggccgtcgctgctgcgcgcgatcgccgcgctgtacgcccaggccggcgaagcggccttc
atcgatccgcgcatccgcttccgcgaggtcgaggccggcggcgcggtcgccgacgaagac
ctgcagcgcgacggcgcgaccgcgccggcgctgatattgcgcgcgctgccggcgccggac
gacgggcgcaagacgtcggtgtggagctcgccggaatcgcgcgagctggccgcgcgcgcc
tgcatagccgcgatccacggctggctcgccgacgcgcgcgacggccgcgccacgatccag
ggccggccgctgcgcccggccgacatcgcggtgctggtgcgcagccacgaagaagccgca
tcgatccagcgcgcgctcgccgcggccggcattgccgcggtcgccgccggccgccgcagc
ctgttcgcgaccgaacaggcgatggaaacgctgaccctgttcgacgcgctgctgcatccc
ggcgacagcggccgcctgcgtgcggcgctggcgacgccgctgctcggcctggacggcgcc
gcggtcgcccgcgtcgccgccgacgaagccgaacaggcgcgctggcaggcgcaggcgctg
caatggcgcgagcgctggcagcgccacggtccgctggccctgctcgccgacctgtgcgcg
caacaggcgccgcggctgctggcgctgggcgacggcgagcgccggctgaccaatctgctg
cagctggccgagaccctgcaggaagccgaccgtcgcgcgctcggcctgcacggcctgcgc
gactggctgcgcctgcgcatcgccgaggccgacgacagcgacgagaagcagcagctgcgg
ctggaatcggatgcgcatcgggtgcagatcctgaccctgcacaagagcaagggcctggag
ttcggcctggtgttcttgccgttcgtggcgctgggccgcgagccgcgcagcggacgctgg
tgcgaataccccgatcccgagcacggccgggtgatgcagctgcaaagcgacgtattcgat
ccggacgcgccgcagtggcaggacgccagcgagcgcgccgcgcaggaagcccgcgccgag
gacgcgcgcctgctctacgtcggcctgacccgcgcgcgccatgcgctgtggatcgcgatc
gggccgctgtaccacgccgcgctgtcgccgctgcagccgatgctggccgatcccgcggcg
ctggcgcgcgagcccggcgtggcgatcgacgccgccgcgatcgagccgccgccgcggccg
ctgccgccggccgcggccggcgcggtgccgccggcgcgcgaggcgcgcgcgcgcgccgcg
cgcgactggtgggtgtacagcttcacccagctgaccaacgaagacagcggcttcgacccg
gccgcgcaggacgagcgcggcgccgaagacgaaccgcaagccgcgcccgacctcgtcgtg
gccgcgccgctgcccggcgacgcgcgcttcggcggcagccgcttcggcaacgtcgtgcac
agcgcgctcgaacgcgtggacttcgccgcatggcgcgattggcgcgacggcgatgcgccg
ccgccgggccaggacgaggcgctggccgcggccatgcgcagcgagggctacgccgaggcc
gacatcgacgacggcctggcgttgctcgcctcgctggtcggccgcaccctggtcgcgccg
ctgcccgagggcgcgcgcctatgcgacgtgcccgagccggcccggcgcagcgaaatggag
ttccacttcggcctcgacgccgcgccggtggatgcgctgctggcggtgctgcacgcgcac
ggacaggtgcgcgagcgccgcggcttcggttcgcgccggcgcctggaaggcctgatgacc
ggcaagatcgacctggtctatgcgcacgagggccgctattacgtgctcgactacaaaacc
aatcgcctgcccggcttcgacgccgcgcaggtcgagcgcgccatggccgaaagcgagtac
gacctgcaatcgctgatctacaccgtcgccctgcaccgctggctgcgcttccgcctcggc
ccggactacgactacgaacgcgacttcggcggcgtgcgctatctgttctgccgcggcctc
gacgccgccgatccgggcgccggcgtgcatgcggccaagccgccgcgcgcgctgatcgag
gcgatggacgcgctgttcgccggagcggcgcgatga
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