Lysobacter yananisis: RDV84_08640
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Entry
RDV84_08640 CDS
T09342
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lya
Lysobacter yananisis
Pathway
lya03420
Nucleotide excision repair
lya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RDV84_08640 (uvrD)
03430 Mismatch repair
RDV84_08640 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_08640 (uvrD)
Enzymes [BR:
lya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RDV84_08640 (uvrD)
DNA repair and recombination proteins [BR:
lya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RDV84_08640 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RDV84_08640 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WMT04892
UniProt:
A0ABY9PCX4
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All DBs
Position
2048215..2050392
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AA seq
725 aa
AA seq
DB search
MDVSHLLDALNPAQREAVSAPPGHYLVLAGAGSGKTRVLTHRIAWLNEVIGVPTHGILAV
TFTNKAAGEMRARVDAQLARGARGMWIGTFHGLAHRLLRLHWQEAKLPEGFQVLDSDDQL
RLVKRVVQALELDDTRFPPRQIAWWINAQKDEGRRPRNIQPGGDEWQEAMLRCYEAYQER
CERAGLVDFAELLLRAHELLRDNAALLAHYRTRFREILVDEFQDTNAIQYAFVRVLAGDS
GHVFVVGDDDQAIYGWRGAKVENVQRFLRDFPGAQTIRLEQNYRSSANILDAANAVIAHN
PDRLGKKLWTDTGHGEAIDLYAAYNEMDEARFVVERMRQWVRDGGSYGDVAVLYRSNAQS
RAFEEALLSEQVPYRVYGGQRFFERAEIKDTLAYLRLIANRADDAAFERAVNTPTRGIGE
RTLDEVRKRARGDAVALWEAARRVAGENVLAARARNALAGFALMIDTLESDVAQMPLPEK
IDHVLQRSGLREHYANESRGQLDSRTDNLDELVSVASRFARSDEDENAEMPELIAFLSYA
ALEAGEGQAQAGEDGVQLMTLHSAKGLEFPLVFLGGLEEGLFPSGRSTEESGRLEEERRL
AYVGITRARDKLVLSYAETRRIHGADMYGVPSRFLREIPAPLLNEVRPKVQVSRPMYRAA
PRRDMGHARIDESPIKLGAQVRHGTFGVGTVTDYEGDGAHARVQVNFDDVGSKWLVLAYA
NLQPA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcgcatctgctcgacgctctcaacccggcccagcgcgaagccgtttcggcg
ccgccggggcattatctggtcctcgccggcgccggcagcggcaagacccgcgtgctgacc
caccgcatcgcctggctcaacgaggtgatcggggtgccgacccacggcatcctcgcggtg
acctttacgaacaaagccgccggagagatgcgcgcgcgcgtcgacgcgcagctggcgcgc
ggcgcgcgcggcatgtggatcggcaccttccacggcctggcccaccgcctgctgcgcctg
cactggcaggaggccaagctgcccgaaggcttccaggtgctcgacagcgacgaccagctg
cgcctggtcaagcgcgtggtgcaggcgctggagctcgacgacacccgcttcccgccgcgc
cagatcgcctggtggatcaacgcgcagaaggacgaaggccggcgcccgcgcaacatccag
cccggcggcgacgagtggcaggaagcgatgctgcgctgctacgaggcctaccaggagcgt
tgcgagcgcgccggtctggtcgacttcgccgaactgctgctgcgcgcgcacgagctgctg
cgcgacaacgccgcgctgctggcgcattaccggacgcgcttccgcgagattctggtcgac
gagttccaggacaccaacgcgatccagtacgccttcgtgcgcgtgctcgccggcgattcc
ggccacgtgttcgtggtcggcgacgacgaccaggccatctacggctggcgcggggccaag
gtcgagaacgtgcagcgtttcctgcgcgatttccccggcgcccagaccatccgcctggag
cagaactaccgctccagcgcgaacatcctcgacgcggccaacgcggtcatcgcccacaac
cccgaccgcctcggcaagaagctgtggaccgacaccggccacggcgaggcgatcgacctg
tacgcggcctacaacgagatggacgaggcgcgcttcgtggtcgagcgcatgcgccagtgg
gtgcgcgacggcggcagctacggcgacgtggccgtgctctaccgcagcaacgcccagtcg
cgcgcgttcgaagaggcgctgctgtcggagcaggtgccttaccgcgtctacggcggccag
cgcttcttcgagcgcgccgaaatcaaggacaccctggcgtacctgcgcctgatcgccaac
cgcgccgatgacgccgcgttcgagcgcgcggtcaacacgccgacccgcggcatcggcgag
cgcaccctcgacgaggtgcgcaagcgcgctcgcggcgacgcggtggcgctgtgggaggcc
gcgcgccgggtcgccggcgagaacgtgctggcggcgcgcgcgcgcaacgcgctggccggc
ttcgcgctgatgatcgacaccctggaaagcgacgtcgcgcagatgccgctgccggagaag
atcgaccacgtgctgcagcgctcgggcctgcgcgaacactacgccaacgaatcgcgcggc
cagctcgattcgcgtaccgacaacctcgacgaactggtctcggtggcctcgcgcttcgcc
cgcagcgacgaggacgagaacgccgaaatgcccgagctgatcgcgttcctcagctacgcc
gcgctggaggctggcgagggccaggcccaggccggcgaggacggcgtgcagctgatgact
ttgcacagcgccaagggcctggagttcccgctggtgttcctcggcgggctggaagagggc
ttgttcccgagcggtcgttcgaccgaggaatccgggcgcctggaagaagagcggcggctg
gcctacgtcggcatcacccgcgcgcgcgacaaactggtgctgagctacgccgagacccgg
cgcatccacggcgcggacatgtacggcgtgccctcgcgcttcctgcgcgagattcccgcg
ccgctgctcaacgaagtgcggccgaaggtgcaggtctcgcggccgatgtaccgcgccgcg
ccgcgccgcgacatgggccacgcgcgcatcgacgaatcgccgatcaagctcggcgcccag
gtgcgtcacggcaccttcggtgtcggcaccgtcaccgactacgaaggcgacggtgcgcat
gcgcgggtgcaggtcaacttcgacgacgtcggcagcaaatggctggtgctggcgtacgcg
aacctgcagcccgcctga
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