Lysobacter yananisis: RDV84_09825
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Entry
RDV84_09825 CDS
T09342
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lya
Lysobacter yananisis
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lya03016
]
RDV84_09825
Enzymes [BR:
lya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RDV84_09825
Transfer RNA biogenesis [BR:
lya03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RDV84_09825
Prokaryotic type
tRNA splicing ligases
RDV84_09825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WMT05121
UniProt:
A0ABY9PDI7
LinkDB
All DBs
Position
complement(2338833..2340053)
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AA seq
406 aa
AA seq
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MSTSHYELLHADEGVAPVKAWIRGVPVDEGAKRQLRNIAALPHVGPWVAAMPDVHLGKGA
TVGSVVPTRGAIIPAAVGVDIGCGMAAVRTTLRAQDLPDSLARVRAAIEHCVPVGNGRGG
EHRRLPDSHATRLAKSGLATRLDAIHAKHRKLRTDKLDKQIGTLGGGNHFIELCLDEAGA
VWVMLHSGSRGTGNLIGSYFIELARIKLEKRTLGFHLPDKDLAFLLEGEPLFDDYVEAVG
WAQDYARHNREAMMDRVLHAMRIQLPKFQLDKTAVNCHHNYVQREQHFGEPLWVTRKGAV
SAREGELGIIPGSMGARSYIVRGKGNADSFHSCSHGAGRVMSRAEARRSITLKQHREATA
HVECRKDAAVIDESPAAYKPIEAVMAAQADLVEVVHTLRQVVCIKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagtacttcacactacgaactgctccacgccgacgaaggcgtggcaccggtcaaggcc
tggatccgcggggtgccggtcgacgagggcgccaagcgccagctgcgcaacatcgccgcc
ctgccccatgtcggcccctgggtcgcggcgatgcccgacgtgcacctgggcaagggcgcc
acggtcggctcggtggtgcccacgcgcggcgcgatcattcccgccgcggtcggcgtcgac
atcggctgcggcatggccgcggtgcgcaccacgctgcgggcccaggacctgcccgacagc
ctggcccgcgtgcgcgcggcgatcgagcactgcgtgccggtcggcaacggccgcggcggc
gagcaccggcgcctgcccgacagccatgccacccggctggcgaagtcggggctggcgacg
cggctggacgcgatccacgccaagcaccgcaagctgcgcaccgacaagctcgacaagcag
atcggcacgctcggcggcggcaaccacttcatcgagctgtgcctggacgaggccggcgcg
gtgtgggtgatgctgcactccggctcgcgcggcaccggcaacctgatcggcagctacttc
atcgagctggcgcggatcaagctggagaagcgcacgctcggcttccacctgccggacaag
gacctggccttcctgctcgaaggcgagcccttgttcgacgactacgtcgaagcggtcggc
tgggcccaggactacgcccgccacaaccgcgaggcgatgatggaccgggtgctgcacgcc
atgcgcatccagctgccgaagttccagctcgacaagaccgcggtcaactgccaccacaac
tacgtccagcgcgaacagcacttcggcgagccgttgtgggtgacgcgcaagggcgcggtc
agcgcgcgcgagggcgagctcgggatcattcccggcagcatgggcgcgcgcagctacatc
gtgcgcggcaagggcaacgccgacagcttccacagctgcagccacggcgccggccgggtg
atgagccgggccgaggcgcgccgcagcatcaccctcaagcagcaccgcgaagccaccgcc
cacgtggaatgccgcaaggacgcggcggtcatcgacgaatcgccggcggcgtacaagccg
atcgaggcggtgatggcggcgcaggccgacctggtcgaggtggtgcacaccctgcgccag
gtggtctgcatcaagggctga
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