Lysobacter yananisis: RDV84_12435
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Entry
RDV84_12435 CDS
T09342
Symbol
sucD
Name
(GenBank) succinate--CoA ligase subunit alpha
KO
K01902
succinyl-CoA synthetase alpha subunit [EC:
6.2.1.5
]
Organism
lya
Lysobacter yananisis
Pathway
lya00020
Citrate cycle (TCA cycle)
lya00640
Propanoate metabolism
lya00660
C5-Branched dibasic acid metabolism
lya00720
Other carbon fixation pathways
lya01100
Metabolic pathways
lya01110
Biosynthesis of secondary metabolites
lya01120
Microbial metabolism in diverse environments
lya01200
Carbon metabolism
Module
lya_M00009
Citrate cycle (TCA cycle, Krebs cycle)
lya_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RDV84_12435 (sucD)
00640 Propanoate metabolism
RDV84_12435 (sucD)
00660 C5-Branched dibasic acid metabolism
RDV84_12435 (sucD)
09102 Energy metabolism
00720 Other carbon fixation pathways
RDV84_12435 (sucD)
Enzymes [BR:
lya01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.5 succinate---CoA ligase (ADP-forming)
RDV84_12435 (sucD)
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Motif
Pfam:
CoA_binding
Ligase_CoA
Succ_CoA_lig
CoA_binding_2
KARI_N
GFO_IDH_MocA
Motif
Other DBs
NCBI-ProteinID:
WMT05610
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All DBs
Position
2934856..2935731
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AA seq
291 aa
AA seq
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MSVLINKNTKVIVQGFTGSQGTFHAEQMLEYGTKVVGGVTPGKGGTQHLGLPVFNTVRDA
VEETGADASVIYVPPPFAADAILEAADAGIKVIVCITEGIPVLDMLRVKNTLNGYDDVVL
VGPNCPGVITPGECKIGIMPGHIHKPGVIGIVSRSGTLTYEAVKQTTDVGLGQSTCIGIG
GDPINGTNFIDALKWFQDDPQTEGIIMVGEIGGSAEEEAAEFIAQYVTKPVVGFIAGASA
PKGKRMGHAGAIASGGSGTAEGKFAAMEKAGVTTVKSPGDLGAAIAKRLGK
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttttgatcaacaagaacaccaaggtgatcgtgcagggcttcaccggctcgcag
ggcaccttccacgccgagcagatgctcgagtacggcaccaaggtcgtcggcggcgtgacc
ccgggcaagggcggcacccagcacctgggcctgccggtcttcaacaccgtgcgcgacgcc
gtcgaagagaccggcgccgacgcctcggtcatctacgtgccgccgccgttcgcggccgac
gcgatcctggaagcggccgacgccggcatcaaggtcatcgtgtgcatcaccgagggcatc
ccggtgctcgacatgctgcgggtcaagaacaccctcaacggctacgacgacgtcgtgctg
gtcggtccgaactgccccggcgtcatcaccccgggcgagtgcaagatcggcatcatgccg
ggccacatccacaagccgggcgtgatcggcatcgtctcgcgctcgggcacgctgacctat
gaagcggtcaagcagaccaccgacgtgggcctgggccagtcgacctgcatcggcatcggc
ggcgacccgatcaacggcaccaacttcatcgacgcgctgaagtggttccaggacgacccg
cagaccgaaggcatcatcatggtcggcgagatcggcggttcggccgaggaagaagcggcc
gagttcatcgcccagtacgtgaccaagccggtggtcggcttcatcgccggcgcctcggcg
ccgaagggcaagcgcatgggccacgccggcgcgatcgcctcgggcggttcgggcacggcc
gaaggcaagttcgcggcgatggaaaaggccggcgtcaccacggtcaagtcgccgggcgac
ctgggcgcggcgatcgccaagcgtctgggcaagtaa
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