Lysobacter yananisis: RDV84_14105
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Entry
RDV84_14105 CDS
T09342
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lya
Lysobacter yananisis
Pathway
lya03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RDV84_14105 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lya03021
]
RDV84_14105 (rpoA)
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_14105 (rpoA)
Enzymes [BR:
lya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RDV84_14105 (rpoA)
Transcription machinery [BR:
lya03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RDV84_14105 (rpoA)
DNA repair and recombination proteins [BR:
lya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RDV84_14105 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
WMT01133
LinkDB
All DBs
Position
3314083..3315081
Genome browser
AA seq
332 aa
AA seq
DB search
MTVTANQVLRPRGPQIERLAGNRAKVVIEPLERGYGHTLGNALRRVLLSSIPGFAITEVE
IDGVLHEYTTVEGLEEDVLEVLLNLKDVAIRMHTGESSTLSLAKQGPGIVTAGDIKTDHN
VEILNTDHVICHLTKDTAINMRLKIERGFGYQPAASRRRPDEESRAIGRLVLDASFSPVR
RVAYAVEAARVEQRTDLDKLVLDIETNGTIDAEEAVRTAADILTDQLSVFGDFTHRDRGA
QKPATSGIDPILLRPIDDLELTVRSANCLKAESIYYVGDLIQKTEVELLKTPNLGKKSLT
EIKEVLAQRGLSLGMKLENWPPAGIASHGMMG
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgacggttaccgccaaccaggtactgcgcccgcgtggcccgcagatcgaacgcctcgcc
ggcaatcgcgccaaagtcgtgatcgagccgttggagcgcggttacggccacacgctgggc
aacgcgctgcgccgcgtgctgctgtcgtcgatcccgggtttcgccatcaccgaggtcgaa
atcgacggcgtgctgcatgagtacaccacggtcgaaggtctggaagaggacgtgctggaa
gtcctgctgaaccttaaggacgtggccatccgcatgcacaccggcgagtcgtcgacgctg
tcgctggccaagcagggccccggcatcgtcaccgccggcgacatcaagaccgaccacaac
gtcgaaatcctcaacaccgaccacgtgatctgccacctgaccaaggacacggcgatcaac
atgcgtctgaagatcgagcgcggcttcggctaccagccggcggcctcgcgccgtcgtccg
gacgaagagagccgcgcgatcggccgcctggtcctggacgccagcttctcgccggtccgc
cgcgtcgcctacgccgtggaagccgcgcgcgtcgagcagcgcaccgacctggacaagctg
gtcctggacatcgagaccaacggcacgatcgacgccgaggaagccgtgcgcaccgccgcc
gacatcctcaccgaccagctgtcggtgttcggcgacttcacccaccgcgaccgcggcgcg
cagaagccggccaccagcggcatcgatccgatcctgctgcgcccgatcgacgatctggag
ctgaccgtgcgttcggccaactgcctcaaggccgagagcatctactacgtcggcgacctg
atccagaagaccgaggtcgagctgctcaagaccccgaacctgggcaagaagtcgctcacc
gagatcaaggaagtgctggctcagcgcggcctgtccctcggcatgaagctcgaaaactgg
ccgccggccggcatcgcctcgcacgggatgatggggtga
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