Lysobacter yananisis: RDV84_15995
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Entry
RDV84_15995 CDS
T09342
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lya
Lysobacter yananisis
Pathway
lya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RDV84_15995 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lya03019
]
RDV84_15995 (rnr)
03016 Transfer RNA biogenesis [BR:
lya03016
]
RDV84_15995 (rnr)
Enzymes [BR:
lya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RDV84_15995 (rnr)
Messenger RNA biogenesis [BR:
lya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RDV84_15995 (rnr)
Transfer RNA biogenesis [BR:
lya03016
]
Prokaryotic type
tRNA degradation factors
RDV84_15995 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
HTH_11
Motif
Other DBs
NCBI-ProteinID:
WMT01481
UniProt:
A0ABY9P5R2
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All DBs
Position
3818651..3821158
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AA seq
835 aa
AA seq
DB search
MAKKTKNKTGKTGNTTTSSSAAPGAKKSARKPAAPRPAWLPENLQHGPGKGPRGKARPAK
GEGSGAAPARTPGAPGKRPAAAPLPSANYGAHQDPHAEREAARYAQPIASRELILQTLSG
ADGPMRAEELAQRLELTEPERADALGKRLAAMIRDGQLLLNRKGEFAPAAQMDLIPGVVI
ANPDGFGFLRPESGGGDDLFLPPFEMRKAMHGDRVLASVTGVDRRGRREGAIVEVLERRL
NRLIGRFTLEQGISYVVPDDRRIQRNVQIPPDARMDAKNGQLVVCELVQAPDHHRPPIGR
VLAVLGEKLTASLAVQAAIHGHEIPDVFPQEALDEASAVPLTVPEAVAAQRVDLRAMPLV
TIDGEDAKDFDDAVYCESNRKGFRLVVAIADVSHYVRPGTPLDDEAQKRATSVYFPGFVV
PMLPETLSNGICSLNPKVDRLCFVCDMQIDHSGEVTSSKFYEAVMNSHARLTYTTVWNAV
GDVPEEAKAEAQAQIGSLLPNIQRLHELFHVLVKARQQRGAIEFESSEVRFVIGKDGEVV
QAGMLQRNDAHKLIEECMIAANVEAAKYLMSMEVPAPYRVHERPPEQKYADLQEFLKEFK
LRMPAWNQVEPRDFTHLLKKIRDRPDATLLESVLLRSQSLAVYAPENTGHFGLALHAYAH
FTSPIRRYPDLLVHRAIKHALSGAKPSAYLYSPRQMAALALQCSERERRADEAEREVDER
YRAAWMEQHVGGEFDGVISGVTSFGLFIELDDSKVNGLVHVTQLPHDYYHFDPIRKTLSG
ERTGREYRLGDRVRIVVLKASVEDRKIDFRLVDEERGAKPLPPRGQPAKRTKQKY
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaagaccaagaacaagaccggaaagaccggcaataccaccacctcctccagc
gcggccccgggtgccaagaagagcgcccgcaagcccgccgcgccgcgcccggcctggttg
ccggaaaacctccagcacggcccgggcaagggcccgcgcggcaaggcccgcccggccaag
ggcgagggttccggcgccgcgcccgcccgcacccctggcgcgccgggcaagcgcccggcg
gccgcgccgctgcccagcgcgaactacggcgcgcaccaggatccgcacgccgagcgcgag
gccgcgcgctacgcccagcccatcgccagccgcgagctgatcctgcagaccctcagcggc
gccgacggcccgatgcgcgccgaggaactggcccagcgcctggaactgaccgagcccgag
cgcgccgacgcgctcggcaagcgactggcggcgatgatccgcgacgggcagttgttgctg
aatcgcaagggcgaattcgccccggccgcgcaaatggacctgatcccgggcgtggtgatc
gccaaccccgacggcttcggcttcctgcgcccggaatccggcggcggcgacgacctgttc
ctgccgccgttcgaaatgcgcaaggccatgcacggcgaccgcgtgctcgccagcgtcact
ggcgtcgaccgccgcggccgccgcgaaggcgcgatcgtggaagtgctcgaacgccggctc
aaccgcctgatcggccgcttcaccctcgagcagggcatcagctacgtggtgcccgacgac
cgccgcatccagcgcaacgtgcagattccgccggatgcgcgcatggacgccaagaacggc
cagttggtggtctgcgagctggtgcaggcgccggaccaccaccgtccgccgatcggccgg
gtgctggcggtgctcggcgaaaagctcaccgcctcgctggcggtgcaggccgcgatccac
ggccacgagattcccgacgtgttcccgcaggaagcgctcgacgaagcctcggcggtgccg
ctgaccgtgcccgaggccgtcgccgcgcagcgcgtcgacctgcgcgcgatgccgctggtc
accatcgacggcgaggacgccaaggacttcgacgacgcggtctattgcgagagcaaccgc
aaaggcttccgcctggtcgtcgccatcgccgacgtctcgcattacgtccgccccggcacg
ccgctggacgacgaagcgcagaagcgcgcgacctcggtctacttccccggcttcgtcgtg
ccgatgctgccggagacgctgtccaacggcatttgttcgttgaatccgaaggtcgaccgg
ctgtgcttcgtctgcgacatgcagatcgaccacagcggcgaggtgacctcgtcgaagttc
tacgaagcggtgatgaattcgcacgcgcgcctgacctacaccaccgtgtggaacgcggtc
ggcgacgtgcccgaggaggccaaggccgaagcgcaggcgcagatcggttcgctgctgccg
aacatccagcgcctgcacgagctgttccacgtgctggtcaaggcgcgccagcagcgcggc
gcgatcgagttcgaatccagcgaagtgcgctttgtcatcggcaaggacggtgaggtggtg
caggccgggatgctccagcgcaacgacgcgcacaagctgatcgaggaatgcatgatcgcg
gccaacgtggaggccgcgaagtacctgatgagcatggaagtcccggcgccgtaccgcgtg
cacgagcggccgccggaacagaagtacgccgacctgcaggagttcctcaaggaattcaag
ctgcgcatgccggcctggaaccaggtggaaccgcgcgacttcacccacttgctgaagaag
atccgcgaccgccccgacgccacgctgctggaatcggtgctgctgcgcagccagagcctg
gccgtgtacgcgccggagaacaccggccacttcggcctggcgctgcacgcctacgcccac
ttcacctcgccgatccggcgctatccggacctgctggtgcaccgcgcgatcaagcacgcg
ctcagcggcgccaagccgtccgcgtacctgtactcgccgcggcagatggcggcgctggcg
ctgcagtgctccgagcgcgaacgccgcgccgacgaggccgagcgcgaggtcgacgagcgc
taccgcgcggcgtggatggaacagcacgtcggcggcgagttcgacggcgtgatcagcggc
gtgaccagcttcggcctgttcatcgagctcgacgactccaaggtcaacggcctggtccac
gtgacccagctgccgcacgactattaccacttcgacccgatccgcaagacgctctcgggc
gaacgcaccggccgcgagtaccggctcggcgaccgcgtgcgcatcgtcgtgctcaaggcc
agcgtcgaagaccgcaagatcgacttccggctagtcgacgaggagcgcggcgccaagccg
ctgccgccgcgcgggcagccggcgaagcggaccaagcagaagtattga
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