Lysobacter yananisis: RDV84_18970
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Entry
RDV84_18970 CDS
T09342
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
lya
Lysobacter yananisis
Pathway
lya03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
RDV84_18970 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_18970 (sbcB)
Enzymes [BR:
lya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
RDV84_18970 (sbcB)
DNA repair and recombination proteins [BR:
lya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
RDV84_18970 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RDV84_18970 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RDV84_18970 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WMT02027
UniProt:
A0ABY9P4T3
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All DBs
Position
complement(4525087..4526532)
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AA seq
481 aa
AA seq
DB search
MPASFLFYDLETFGADPRTTRIAQFAAMRTDAELNEVEAPISVFVKPADDLLPSPMATLI
TGIAPQDALRDGVTEAQIFALIFEEMARPQTCTAGYNSLRFDDEFVRYGLFRNFYDAYER
EWRNGNSRWDLLDVLRLARALRPDGLQWPQREDGFTSFKLEHLAVANDVRVGDAHEALSD
VRALIGIARKLKQSQPRLWEYALRLRDKRFAASLLDPIAMQPALHVSSRYPAARLCAAPV
IPLARHPRIDSRIVVFDLEQDPQALLDLAADEIADRLYTPSADLPEGEERVALKEVHLNR
CPALTAWNHLRADDFERLSIDPVRAEYRAAQLREAGPELVEKVRRVYARDAARAPADADA
SLYDAFIGDGDKRLFRGVRAAAPEELAHAAFEFRDARLPELLFRYRARNWPQSLSAAERE
RWDDYRRQRLDGESGLSEYSFARFAEELRQVRAHAGEDGAKQALLDRLEDWGRGLWRELH
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgccggccagcttcctgttctacgacctggaaaccttcggcgccgacccgcgcacgacc
cgcatcgcccagttcgcggcgatgcgcaccgacgccgagctcaacgaggtcgaggcgccg
atcagcgtcttcgtcaagcccgccgacgacctgctgccctcgccgatggcgaccctgatc
accggcatcgcgccgcaggacgcgctgcgcgacggcgtgaccgaggcgcagatcttcgcc
ctgatcttcgaggaaatggcccgaccgcagacctgcaccgccggctacaactcgctgcgc
ttcgacgacgaattcgtccgctacggcctgttccgcaatttctacgacgcctacgaacgt
gaatggcgcaacggcaactcgcgctgggacctgctcgacgtgctgcggctggcgcgcgcg
ctgcgtccggacgggctgcagtggccgcagcgcgaggacggcttcacttcgttcaagctc
gaacacctggccgtcgccaacgacgtgcgcgtcggcgacgcccacgaggcgctgtcggac
gtgcgcgccttgatcggcatcgcgcgcaagctcaagcagtcgcagccgcggctgtgggag
tacgcgctgcgcctacgcgacaagcgcttcgccgccagcctgctcgaccccatcgcgatg
cagccggccctgcacgtgtcctcgcgctatccggccgcgcgcctgtgcgcggcgccggtg
atcccgttggcgcggcacccgcgcatcgacagccgcatcgtcgtgttcgacctggaacag
gacccgcaggcgttgctggacctggccgcggacgagatcgccgaccgcctctacaccccg
tcggccgacctgcccgaaggcgaggagcgggtcgcgctcaaggaagtgcacctcaaccgc
tgcccggcgttgaccgcctggaaccacctgcgcgcggacgacttcgagcgcttgagcatc
gatccggtgcgcgccgaataccgcgccgcgcagttgcgcgaagccggccccgagctggtc
gagaaagtccgccgcgtctacgcccgcgacgccgcgcgcgcgcccgccgacgccgacgcc
tcgctctacgacgccttcatcggcgatggcgacaagcgcctgttccgcggcgtgcgcgcc
gccgcgccggaggaactggcgcacgccgcgttcgagttccgcgacgcgcgcctgcccgaa
ctgctgttccgctaccgcgcgcgcaactggccgcagagcctcagcgcggccgaacgcgag
cgctgggacgactaccgccgccagcgcctggacggcgaatcgggcctgtcggaatacagc
ttcgcccgcttcgccgaagagctgcgccaggtccgcgcccacgccggcgaagacggcgcc
aagcaggccttgctggatcggctggaggactggggccgcggactgtggcgggaactacac
gcgtga
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