Lysobacter yananisis: RDV84_20240
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Entry
RDV84_20240 CDS
T09342
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lya
Lysobacter yananisis
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lya03032
]
RDV84_20240
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_20240
Enzymes [BR:
lya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RDV84_20240
DNA replication proteins [BR:
lya03032
]
Prokaryotic type
DNA Topoisomerases
RDV84_20240
DNA repair and recombination proteins [BR:
lya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RDV84_20240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
WMT02273
LinkDB
All DBs
Position
4903257..4904306
Genome browser
AA seq
349 aa
AA seq
DB search
MASSPPSDRDPPATGLRYVVDDEPGFSRRRAGRGFAYRDARGRPVRAARQLERIRALAIP
PAYTEVWICADPRGHLQATGRDARGRKQYRYHPRWRELRERGKFERIVAFAAALPALRRR
VRADLALPGLPRSKVLAIVVAVMAHTLVRVGNDQYQRSNGSFGLTTLRKRHLQLLRGGRA
QLAFRGKGGLRQQIELDDARLVRLVRRCRQLPGQALFQYRDEDGGRQAVGSGDVNEYLRE
AMGADFTAKDFRTWGATAAAFRRFASTELPPPRRDGRRNERAIARIENEAVAEVAQLLRN
TPAICRKSYIHPAVLESWREGRLTLPARTPSSGRQWERAALAFLRKRRR
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccccgccctccgaccgcgatccccccgccaccggcctgcgctacgtcgtc
gacgacgagcccggcttcagccgccgccgcgccggccgcggcttcgcctaccgcgacgcg
cgcgggcggccggtgcgcgcggcccgccagctcgaacgcatccgcgcgctggcgatcccg
ccggcctacaccgaggtgtggatctgcgccgatccgcgcggccacctgcaggcgaccggc
cgcgatgcgcgcgggcgcaagcagtaccgctatcacccgcgctggcgcgaattgcgcgag
cgcggcaagttcgagcgcatcgtcgccttcgccgccgccctgcccgcgctgcgccggcgc
gtgcgcgccgacctcgccctgcccgggctgccgcggagcaaggtgctggcgatcgtggtc
gcggtgatggcgcacaccctggtgcgggtgggcaacgaccagtaccagcgcagcaacggc
tcgttcggcctgaccacactgcgcaagcgccacctgcagttgttgcgcggcggccgcgcg
cagctggcgtttcgcggcaagggcggcctgcgccaacaaatcgagctcgacgacgcgcgt
ctggtgcggctggtgcgccgttgccggcaactgccgggccaggcgctgttccagtaccgc
gacgaggacggcggccgccaggcggtgggttccggcgacgtcaacgagtacctgcgcgag
gccatgggcgcggacttcaccgccaaggacttccgcacctggggcgcgaccgcggccgcg
ttccgccgcttcgcctcgaccgagctgccgccgccgcggcgcgacggccgccgcaacgaa
cgcgcgatcgcgcggatcgagaacgaggccgtggccgaagtcgcgcaactgctgcgcaac
accccggcgatctgccgcaagtcctacatccatccggcggtgctggaaagctggcgcgaa
ggccggctgaccctgccggcgcgaacgccgtcgagcggccgccagtgggagcgcgccgcg
ctggcgttcctgcgcaagcgccggcgctga
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