Lysobacter yananisis: RDV84_21010
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Entry
RDV84_21010 CDS
T09342
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
lya
Lysobacter yananisis
Pathway
lya00220
Arginine biosynthesis
lya00240
Pyrimidine metabolism
lya00250
Alanine, aspartate and glutamate metabolism
lya01100
Metabolic pathways
lya01110
Biosynthesis of secondary metabolites
lya01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
RDV84_21010 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
RDV84_21010 (carB)
00220 Arginine biosynthesis
RDV84_21010 (carB)
Enzymes [BR:
lya01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
RDV84_21010 (carB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D1
CPSase_L_D3
MGS
Dala_Dala_lig_C
ATP-grasp
ATP-grasp_4
ATPgrasp_Ter
ATP-grasp_3
ATP-grasp_5
Motif
Other DBs
NCBI-ProteinID:
WMT02418
UniProt:
A0ABY9P5S0
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All DBs
Position
complement(5110252..5113497)
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AA seq
1081 aa
AA seq
DB search
MPKRTDIKTVLIIGAGPIVIGQACEFDYSGAQACKALRDEGYRVVLVNSNPATIMTDPNM
ADAVYIEPINWQTVEKIIAKEKPDALLPTMGGQTALNCALDLADNGVLEKYNVELIGAKR
DAIRMAEDRELFRVAMSEIGLECPRAAVARTLEEAIEIQARVGYPTIIRPSFTLGGSGGG
IAYNREELIEIVTRGLELSPTTEVLVEESVLGWKEFEMEVVRDTADNCIIVCSIENFDAM
GVHTGDSITVAPAQTLTDKEYQRLRDASIAVLRKIGVDTGGSNVQFGINAQNGRVVVIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELRNEITGGATPASFEPSIDYVVTKIP
RFAFEKFPQADARLTTQMKSVGEVMAMGRTFQESLHKALRGLETGKVGLDPTGLDLSSDS
DLAVLKRELKEPGPERMFYIGDAFRAGLSVEDVHALSFVDPWFLDQIEELIATEREVADA
GLGALDKARMRALKRMGFSDARLAQLTGTDETAVRTLRRAFGVRPVYKRVDSCAAEFATT
TAYMYSTYEDECEANPTGRDKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVN
CNPETVSTDYDTSDRLYFEPLTLEDVLEIADLEKPKGVIVQYGGQTPLKLARALEANGVP
IVGTTPDSIDLAEDRERFQKLVQELGLAQPLNRTARNPDEALALASQIGYPLVVRPSYVL
GGRAMEIVYSDADLSRYIRDAVKVSNDSPVLLDRFLDNAVEVDVDVIADREGRVLIGGVM
EHIEEAGVHSGDSSCSLPPYSLSPATQERLREQVVALAKALKVVGLMNTQFAIQTDADGN
ETIYLIEVNPRASRTVPFVSKATGMALAKIAARCMVGQTLTSQDAVDEIVPDYYSVKEAI
FPFAKFQGVDPILGPEMRSTGEVMGVGQNFGAAMARAQEAGGIKAPPVGKVFISVRDPDK
QRVLPVAQELARRGYGLVATSGTQAFFAEHGVACESINKVTEGRPHIVDLIKNGEIVYII
NTTEGRQAISDSFSIRREALQQRVTYSTTVSGARALVNSLDYRGQGPVWSLQELHAQIGG
R
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcgtaccgacatcaaaaccgtcctgatcatcggcgccggcccgatcgtgatc
ggccaggcctgcgagttcgactactccggcgcgcaggcgtgcaaggcgctgcgcgacgag
ggctatcgcgtggtcctggtcaactccaaccccgccacgatcatgaccgacccgaacatg
gccgacgccgtgtacatcgagccgatcaactggcagacggtcgagaagatcatcgccaag
gaaaagcccgacgcgctgctgccgaccatgggcggccagaccgcgctgaactgcgcgctc
gacctggccgacaacggcgtgctggagaagtacaacgtcgaattgatcggcgccaagcgc
gacgccatccgcatggccgaggaccgcgagctgttccgcgtggcgatgagcgagatcggc
ctggaatgcccgcgcgccgcggtcgcgcgcacgctggaagaggcgatcgagatccaggcg
cgggtcggctacccgaccatcatccgccccagcttcaccctcggcggcagcggcggcggc
atcgcctacaaccgcgaagagctgatcgagatcgtcacccgcggcctggaactgtcgccg
accaccgaagtgctggtcgaagagtcggtgctgggctggaaggagttcgagatggaagtg
gtccgcgacaccgcggacaactgcatcatcgtctgctcgatcgagaacttcgacgcgatg
ggcgtgcacaccggcgactcgatcaccgtcgccccggcgcagaccctgaccgacaaggaa
taccagcgcctgcgcgacgcctcgatcgcggtgctgcgcaagatcggcgtcgacaccggc
ggctccaacgtgcagttcggcatcaacgcgcagaacggccgcgtggtggtgatcgagatg
aatccgcgcgtgtcgcgctcctcggcgctggcgtcgaaggcgaccggcttcccgatcgcc
aagatcgccgccaagctggcggtcggctacaccctggacgaactgcgcaacgagatcacc
ggcggcgcgaccccggcttcgttcgagccgtcgatcgactacgtggtcaccaagatcccg
cgcttcgcgttcgagaagttcccgcaggccgacgcgcgcctgaccacgcagatgaagtcg
gtcggcgaggtcatggcgatgggccgcaccttccaggaatcgctgcacaaggcgctgcgc
gggctggagaccggcaaggtcggcctcgacccgaccggcctggacctgtcgagcgacagc
gatctggccgtgctcaagcgcgagctcaaggaaccgggcccggagcgcatgttctacatc
ggcgacgcgttccgcgccggtctcagcgtcgaggacgtgcacgcgctgtcgttcgtcgat
ccgtggttcctcgaccagatcgaggaactgatcgcgaccgagcgcgaggtcgccgacgcc
ggcctgggcgcgctcgacaaggcccgcatgcgcgcgctcaagcgcatgggcttctccgac
gcgcgcctggcccagctgaccggcaccgacgagaccgcggtgcgcaccctgcgccgcgcg
ttcggcgtgcgcccggtgtacaagcgggtggactcctgcgccgccgaattcgccaccacc
accgcctacatgtactcgacctacgaggacgagtgcgaggccaacccgaccggccgcgac
aagatcatcgtgctcggcggcggccccaaccgcatcggccagggcatcgagttcgactat
tgctgcgtgcacgccgcgctcgccctgcgcgaggacggctatgaaaccatcatggtcaat
tgcaacccggagaccgtgtcgaccgattacgacacctccgaccgcctgtacttcgagccg
ctgacgctggaagacgtgctcgaaatcgccgatctggaaaagcccaagggcgtgatcgtg
cagtacggcggccagaccccgctgaagctggcgcgcgcgctggaagccaacggcgtgccg
atcgtcggcaccaccccggacagcatcgacctggccgaggaccgcgagcgcttccagaag
ctggtgcaggagctgggcctggcccagccgctcaaccgcaccgcgcgcaatcccgacgag
gcgctggccctggcctcgcagatcggctatccgctggtggtgcgcccgagctacgtgctc
ggcggccgggcgatggagatcgtctactccgacgccgacctgagccgctacatccgcgac
gcggtcaaggtctccaacgattcgccggtgctgctggaccgcttcctcgacaacgccgtg
gaagtcgacgtcgacgtgatcgccgaccgcgaaggccgggtgctgatcggcggcgtcatg
gagcacatcgaggaggccggcgtgcactcgggcgactcctcgtgctcgctgccgccgtac
tcgctgtcgccggcgacccaggaacggctgcgcgagcaggtggtggcgctggccaaggcg
ctcaaggtggtcgggctgatgaacacccagttcgcgatccagaccgacgccgacggcaac
gaaaccatctacctgatcgaggtcaacccgcgcgcctcgcgcaccgtgccgttcgtgtcc
aaggccaccggcatggcgctggccaagatcgccgcgcgctgcatggtcggccagaccctg
acctcgcaggacgcggtcgacgagatcgtgccggactactactcggtcaaggaagcgatc
ttcccgttcgccaagttccagggcgtcgatccgatcctcgggccggagatgcgctccacc
ggcgaggtgatgggcgtgggccagaacttcggcgcggcgatggcgcgcgcgcaggaggcc
ggcggcatcaaggcgccgccggtgggcaaggtgttcatctccgtgcgcgatccggacaag
cagcgggtgctgccggtggcgcaggaactggcgcgccgcggctacggcctggtcgccacc
agcggcacccaggcgttcttcgccgagcacggcgtggcctgcgagtcgatcaacaaggtc
accgaaggccgcccgcacatcgtcgacctgatcaagaacggcgagatcgtctacatcatc
aacaccaccgaaggccgccaggcgatctcggattcgttctcgatccggcgcgaggcgctg
cagcagcgggtgacctattcgaccaccgtgtcgggcgcgcgcgcgctggtcaactcgctc
gactaccgcggccaggggccggtgtggtcgctgcaggaactgcacgcgcagatcggcgga
cgctga
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