Lysobacter yananisis: RDV84_21290
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Entry
RDV84_21290 CDS
T09342
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lya
Lysobacter yananisis
Pathway
lya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RDV84_21290 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lya03019
]
RDV84_21290 (pnp)
03016 Transfer RNA biogenesis [BR:
lya03016
]
RDV84_21290 (pnp)
Enzymes [BR:
lya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RDV84_21290 (pnp)
Messenger RNA biogenesis [BR:
lya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RDV84_21290 (pnp)
Transfer RNA biogenesis [BR:
lya03016
]
Prokaryotic type
tRNA degradation factors
RDV84_21290 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_2
Phage_tube
KH_5
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
WMT02469
UniProt:
A0AA51SEQ5
LinkDB
All DBs
Position
complement(5178513..5180621)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGNHQVTLETGEIARQAGGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYRNEVQIIATVMSLN
PEVDGDIPALIGASAAMALAGTPFQGPIGAAKVGYKNGQYLLNPTAAELADSDLELVVAG
TSNAVLMVESEANMLSEEVMLGAVMFGHREMQKVINVINELVVEAGTKPSSWEAPAKNEA
LIGALKEAVGDQLAGAFQVRDKLQRRDAIGAIKKDVLLSLAGRAESEGWSSGELSKEFGE
LEYQTMRSSVLDTKIRIDGRALDTVRPISSKVGVLPRTHGSSLFTRGETQAIVVATLGTA
RDGQIIDAVSGEYKEHFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSME
AFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDNFVVLS
DILGDEDHLGDMDFKVAGTSEGISALQMDIKIQGITEEIMKVALEQAKAGRLHILGEMAH
AITESRSELSEYAPRLLTMKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKSRIDQIVSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSERV
EKVSDKLKEGDVVKVKVLEVDKQGRIRLSIKAVEEGEGVSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaattaccaagaccttccagtacggcaaccatcaggtgaccctggagaccggc
gagatcgcccgtcaggccggcggcgccgtcatcgtcaagatggacgacaccgtgctgctg
gtgaccgccgtcgccgccaagagcgcgcgcgaggggcaggatttcttcccgctcaccgtc
gattaccaggagaagttctacgccggcggccgcatcccgggcggcttcttcaagcgcgaa
ggccgcgcgacggagaaggaaaccctgatctcgcgcctgatcgaccgtccgatccgcccg
ctgttcccggaagactaccgtaacgaagtgcagatcatcgccacggtgatgtcgctgaat
ccggaagtcgacggcgacatcccggcgctgatcggcgcctcggccgcgatggcgctggcc
ggcaccccgttccagggcccgatcggcgcggccaaggtcggttacaagaacggccagtac
ctgctcaacccgaccgccgccgagctggccgactccgacctggaactggtcgtggccggc
acctccaacgcggtgctgatggtcgaatccgaagccaacatgctgtccgaagaggtcatg
ctcggcgcggtgatgttcggccatcgcgagatgcagaaggtcatcaacgtcatcaacgag
ctggtcgtcgaagccggcaccaagccgtcgagctgggaagctccggccaagaacgaagcg
ctgatcggcgcgctcaaggaagcggtgggcgaccagctcgccggcgccttccaggtgcgc
gacaagctgcagcgccgcgacgccatcggcgcgatcaagaaggacgtgctgttgtcgctg
gccggccgcgccgaatccgagggctggtcctcgggcgaactgtcgaaggaattcggcgag
ctcgaataccagaccatgcgcagctcggtgctcgacaccaagatccgcatcgacggccgc
gcgctcgacaccgtgcgtccgatctcctcgaaggtcggcgtgctgccgcgcacccacggc
tcctcgctgttcacccgcggcgagacccaggccatcgtggtcgccaccctcggcaccgcg
cgcgacggccagatcatcgacgccgtctcgggcgagtacaaggaacacttcctgttccac
tacaacttcccgcccttctcggtcggcgagtgcggccgcatgatgggcccgaagcgccgc
gagatcggccacggccgcctggccaagcgcggcgtgctcgcggtgatgccgagcatggaa
gcgttcccgtacaccatccgcgtggtctcggaaatcaccgagtcgaacggctcgtcctcg
atggcttcggtctgcggcagctcgctggcgctgatggacgccggcgtgccgatcaaggcg
ccggtcgccggcatcgcgatgggcctggtcaaggaaggcgacaacttcgtcgtcctgtcc
gacatcctgggcgatgaagaccacctcggcgacatggacttcaaggtcgccggcacgtcg
gaaggcatctcggcgctgcagatggacatcaagatccagggcatcaccgaagagatcatg
aaggtcgcgctggagcaggccaaggccggccgcctgcacatcctcggcgagatggcccac
gccatcaccgagtcgcgctcggagctgtccgagtacgcgccgcgcctgctgacgatgaag
atccacccggacaagatccgcgaagtgatcggcaagggcggctcgaccatccaggcgatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcctcg
gtcaacgccgccgccgcgcaggccgccaagtcgcgcatcgaccagatcgtctccgacgtc
gagccgggccgcatctacgagggcaaggtcgccaagatcatggacttcggcgcgttcgtg
accatcctgccgggcaaggacggcctggtgcacgtgtcgcagatctccagcgagcgcgtc
gagaaggtctccgacaagctcaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatcaaggccgtggaagaaggcgagggcgtgtcg
gccgaataa
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