Lysobacter yananisis: RDV84_24445
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Entry
RDV84_24445 CDS
T09342
Symbol
gcvP
Name
(GenBank) aminomethyl-transferring glycine dehydrogenase
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
lya
Lysobacter yananisis
Pathway
lya00260
Glycine, serine and threonine metabolism
lya00630
Glyoxylate and dicarboxylate metabolism
lya00670
One carbon pool by folate
lya00785
Lipoic acid metabolism
lya01100
Metabolic pathways
lya01110
Biosynthesis of secondary metabolites
lya01200
Carbon metabolism
Module
lya_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RDV84_24445 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RDV84_24445 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RDV84_24445 (gcvP)
00670 One carbon pool by folate
RDV84_24445 (gcvP)
Enzymes [BR:
lya01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
RDV84_24445 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
WMT03066
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Position
5912927..5915785
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AA seq
952 aa
AA seq
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MTHSTLRDLEHHDAFIERHIGPNDAEIGHMLEQVGYASLEALTDAIVPGSIKSPQPLALP
PAIGEVEALAKIRAIAAKNQVLRSFIGRGYYGTHTPNVILRNILENPAWYTAYTPYQAEI
SQGRMEALINFQTMVADLTGMEIANASLLDEATAAAEAMTLAKRSAKSKSDTFFVSKNVH
PQTLEVLRTRAEPLEIQLLVADDSEAASADVFGALLQYPDTFGGLGDYQATADALHARGA
ILAVASDLLALVLLKSPGEFGADIVVGNTQRFGVPFGFGGPHAGFMACRDAYKRSMPGRL
IGVSVDSDGKPAYRLTLQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPDGLTRIA
RRVHRQAAILAAALRQAGVKVADGFFDTLRIDGVDAAAIHAQARAARINLREIDAGSVGI
SLDETVTREDLTALAGLFGAKLDIDTLDASTADAIPAALRRASAFLQHPVFNTHHSEHEL
LRYMRSLADKDLAMDRTMIPLGSCTMKLNATAEMIPVTWPEFGNIHPLAPADQTTGYKQL
IDELEAMLVECTGYDAVSLQPNSGAQGEYAGLLAIRAYHRSRGEGHRDICLIPDSAHGTN
PASAQMCGMTVVVTKTDANGNVDVEDIRRNAEKYSDRLAAIMMTYPSTHGVFEEEVVEIC
QIIHQHGGQVYTDGANMNALVGVAKPGKWGSDVSHLNLHKTFCIPHGGGGPGVGPCAVKS
HLAPFLPKTVDGEGAVGMVSAASYGSASILPISWMYVTLMGTQGLRKATQVALLNANYIA
KRLEPHYETLYTGRNGLVAHECILDLRPLKDATGISAEDVAKRLIDFGFHAPTLSFPVAG
TLMVEPTESESQHELDRFIDAMIQIREEIRAVEDGRLDREDNPLKHAPHTATQVSASEWT
RAYPRELAAFPLPSLKLQKYWPPVSRVDNVYGDKNVMCACIPVDAYKEEVEA
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgactcattcgaccctgcgcgatctcgagcaccacgacgccttcatcgagcgccacatc
ggccccaacgacgccgaaatcggccacatgctcgagcaggtcggctacgcctcgctcgaa
gcgctgaccgacgccatcgtccccggctcgatcaagtccccccagccgctggccctgccg
ccggcgatcggcgaagtggaagcgctggccaagatccgcgccatcgccgcgaagaaccag
gtgctccgcagcttcatcggccgcggctactacggcacccacacccccaacgtcatcctg
cgcaacatcctggagaacccggcgtggtacacggcctacacgccgtaccaggcggaaatc
tcgcagggccgcatggaagcgctgatcaacttccagaccatggtcgccgacctgaccggg
atggagatcgccaacgcctcgctgctcgacgaagccaccgccgcggccgaggcgatgacc
ctggccaagcgttcggccaagtccaagtccgataccttcttcgtctcgaagaacgtgcat
ccgcagacgctggaagtgctgcgcacccgcgccgagccgctggagatccagctgctggtc
gccgacgacagcgaggccgcgagcgccgacgtgttcggcgcgctgctgcaataccccgac
accttcggcggcctcggcgattaccaggccaccgccgacgcgctgcacgcgcgcggcgcg
atcctggccgtggccagcgacctgctcgccctggtgctgctgaagtcgccgggcgaattc
ggcgctgacatcgtcgtcggcaacacccagcgcttcggcgtgccgttcggcttcggcggt
ccgcacgccggcttcatggcctgccgcgacgcctacaagcgctcgatgccgggccgcctg
atcggcgtgtcggtcgacagcgacggcaagccggcctaccgcctgaccctgcagacccgc
gagcagcacatccgccgcgagaaggccaccagcaacatctgcaccgcgcaggtgctgctg
gcggtcatggcgagcatgtacgcggtctaccacggccccgacggcctgacccgcatcgcc
cgccgcgtccaccgccaggccgcgatcctcgccgccgcgctgcgccaggccggggtaaag
gtcgccgacggcttcttcgacaccctgcgcatcgacggcgtcgacgccgccgcgatccac
gcccaggcccgcgccgcgcgcatcaacctgcgcgagatcgacgccggcagcgtcggcatc
agcctcgacgaaaccgtcacccgcgaagacctcaccgcgctggccggcctgttcggcgcc
aagctcgacatcgacacgctcgacgcgtccaccgccgacgcgatcccggccgcgctgcgt
cgcgcctccgcgttcctgcagcacccggtgttcaacacccaccacagcgaacacgagctg
ctgcgctacatgcgctcgctggccgacaaggacctggcgatggatcgcaccatgatcccg
ctgggctcgtgcacgatgaagctcaacgccaccgccgagatgatcccggtgacctggccg
gagttcggcaacatccatccgctggcgccggccgatcaaaccaccggctacaagcagctg
atcgacgaactcgaagcgatgctggtggaatgcaccggctacgacgcggtcagcctgcag
cccaactccggcgcgcagggcgaatacgccggcctgctggcgatccgcgcctaccaccgc
tcgcgcggcgagggccatcgcgacatctgcctgatccccgactccgcccacggcaccaac
ccggcctcggcgcagatgtgcggcatgaccgtggtggtgaccaagaccgacgccaacggc
aacgtcgacgtcgaggacatccgccgcaacgccgagaagtacagcgaccgcctggccgcg
atcatgatgacctacccgtccacgcacggcgtgttcgaggaagaagtcgtcgagatctgc
cagatcatccaccagcacggcggccaggtgtacaccgacggcgccaacatgaacgccctg
gtcggcgtggccaagccgggcaagtggggttccgacgtttcgcacctgaacctgcacaag
accttctgcatcccgcacggcggcggcggcccgggcgtcggcccgtgcgcggtcaagtcg
cacctcgcgccgttcctgccgaagaccgtcgacggcgaaggcgcggtcgggatggtcagc
gcggccagctacggctcggccagcatcctgccgatctcgtggatgtacgtgaccctgatg
ggcacgcaaggcctgcgcaaggcgacccaggtcgcgctgctcaacgccaactacatcgcc
aagcgcctggaaccgcactacgagacgctctacaccggccgcaacggcctggtcgcgcac
gagtgcatcctcgacctgcgcccgctcaaggacgccaccggcatcagcgccgaggacgtg
gccaagcgcctgatcgacttcggcttccacgccccgaccttgagcttcccggtcgccggc
acgctgatggtcgagccgaccgagagcgaatcgcagcacgagctcgaccgtttcatcgac
gcgatgatccagatccgcgaagagatccgcgcggtcgaggacggccgtctggaccgcgag
gacaacccgctcaagcacgccccgcacaccgccacccaggtcagcgccagcgagtggacc
cgtgcctacccgcgcgaactggccgcgttcccgctgccgtcgctgaagctgcagaagtac
tggccgccggtgtcgcgcgtggacaacgtgtatggcgacaagaacgtcatgtgcgcctgt
attccggtggatgcgtacaaggaagaagtcgaggcgtaa
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