Lysinibacillus sp. B2A1: C3943_05115
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Entry
C3943_05115 CDS
T05347
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lyb
Lysinibacillus sp. B2A1
Pathway
lyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3943_05115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyb03019
]
C3943_05115
Messenger RNA biogenesis [BR:
lyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3943_05115
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
CFAP54_N
DUF5548
Raco_middle
Motif
Other DBs
NCBI-ProteinID:
AVK82977
LinkDB
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Position
complement(1113108..1114775)
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AA seq
555 aa
AA seq
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MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VRNVDKIKGLFITHGHEDHIGGIPYLLRQVNIPVYGGKLALGLLRNKLEEHGLLRTTKLI
EIKEDDVIKFRKTSVSFFRTTHSIPDAYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEKPNFTMSERTVGKSIDEIFRKVDSRIIFATFASNIHRLQQ
ATDAAIKYGRKIAVFGRSMDNAITIGRELGYINAPKDTFIDAQSINRLPANEVMILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVIFSSSPVPGNTVSVNKIINLLFRAGAEVIHGAL
NNIHTSGHGSQEEQKLMLRLMKPKFFMPIHGEFRMLKMHTHLAEDCDVPFENTFVMENGD
VLALSANEAHVAGRIPSGDVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSVDMVNQKI
VSGPDIISRGFVYMRESGTMINEAQKMLNRHLNETIQSKTPQWTELKNEITDVLGPYLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgttaaaaatgaccaagcagctgttttcgcactcggcggactgggcgaaatc
ggcaagaacacttacggcgttcaatttcaagatgaaatcattttgattgatgctggcata
aaatttccagaagatgacttactcggcattgactatgtcattccagactatacgtattta
gtacgtaacgttgataaaattaaaggcttatttattacacatgggcatgaggaccatatt
ggtggtattccctatttattacgtcaagtaaatatccctgtctatggcggtaagcttgca
cttggcctattacgtaataaattagaagaacatggcttgctgcgtacaacaaagctaatc
gaaattaaagaagatgatgtaattaagtttagaaaaacatccgttagcttctttagaaca
actcatagtattcccgatgcctatggtattgtcgtaaaaactccaccaggaaacattgtg
catactggtgacttcaagtttgattttacacctgtaggcgaaccagctaacctaacaaaa
atggcagaaatcggacgtgacggtgtactttgcttactttcagatagtacaaatgctgaa
aaaccgaatttcacaatgtctgaacgtacagttggaaaaagtattgatgaaatattccgt
aaggtagatagtcgtattatttttgcaacatttgcatcaaatatacatcgtttacaacag
gctacagatgctgcgataaaatacggacgaaaaatagctgtttttggacgttcaatggat
aatgctattacaattgggcgtgagctcggttatataaacgcaccaaaggatacattcatt
gatgcccaaagtattaatcgcctccctgctaatgaagttatgattttatgtacaggctct
cagggtgagccaatggcagctctatcacgtattgcgaatggtacacatcgccaaattcaa
attcaacctggtgacacagttatcttttcatcctcaccagtacctggaaatacagtaagt
gtcaacaaaattattaatttactgttccgcgcaggtgcagaggttattcatggtgcacta
aataatattcatacctctggacacggttctcaggaagaacaaaaactgatgctacgtttg
atgaagccaaaattctttatgcctatccatggtgaattccgtatgttaaaaatgcataca
cacctagcagaagactgtgatgtgccatttgaaaatacgttcgttatggaaaatggtgat
gtccttgcattaagtgccaatgaagctcatgtagcaggacgtataccttctggcgacgta
tacattgacggtaatggtattggagatatcggcaatatcgtgctacgtgatcgccgcatt
ctttcagaggaaggtttagttattgttgttgtcagtgttgatatggtaaatcaaaaaatt
gtttccggtccagacattatttctagaggatttgtttacatgcgtgagtcaggaacgatg
attaatgaagctcaaaaaatgctaaatcgtcatcttaacgaaacaattcaaagcaaaacc
cctcaatggactgaactaaaaaatgaaattacagatgtcttaggaccttatctatttgaa
aagacaaaacgtcgaccaatgattttaccaattattatggaggtttaa
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