Lysinibacillus sp. B2A1: C3943_06535
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Entry
C3943_06535 CDS
T05347
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lyb
Lysinibacillus sp. B2A1
Pathway
lyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3943_06535 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyb03019
]
C3943_06535 (rny)
Messenger RNA biogenesis [BR:
lyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C3943_06535 (rny)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
AVK83243
UniProt:
A0A2S0JIF9
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Position
1412196..1413755
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AA seq
519 aa
AA seq
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MDGITIISALLGIIVGAAVSYIYMKKVNDSKITGAKHVAETIVEEGKREAEALKKEALLE
AKDETHKFRTEAENDIRERRLELQKQENRLLQREENLDRKDDALNKREAGLERKEQALAE
RQQHIEQMESKVDELVASQKAELERISALTRDEAKTIILGEVEKELATDIAVMTKESETR
AKEESDKKAREILSLALQRFAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARLALEKLVQDGRIHPARIEEMVEKARREVDEQIRE
TGEQTTFEIGIHNLHPDLMKILGRMKYRTSYGQNVLKHSIEVAYLAGLLAAELGEDVALA
RRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEATSVIAVLVA
AADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSYAIQAGREIRIIVQPEKIDD
LASHRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggatggaattactatcatctccgctttgcttggaatcatcgttggtgccgctgttagc
tatatctacatgaaaaaagtgaatgactcaaaaatcactggtgctaaacatgttgctgaa
acaatcgttgaagaaggaaaacgagaagcggaggcattgaaaaaagaagcactacttgaa
gccaaagatgaaactcacaaatttcgtactgaagctgagaatgacattcgtgaacgtcgt
ttagaacttcaaaaacaagagaaccgtttattgcaaagagaagagaatcttgatcgcaaa
gatgatgctctaaataagagagaagcaggcttagagcgtaaagaacaagctcttgccgaa
agacaacagcatattgaacagatggaaagcaaagtggacgagctcgttgcctcgcaaaaa
gcagagctagaaagaatttctgctttaactagagatgaagcaaagactattatcttaggg
gaagtagaaaaagagctagcaactgatattgctgtgatgacgaaggaatcagaaacacgt
gcgaaagaagaatcagataaaaaagcacgtgaaattttatcattagcattacaacgtttt
gctgcggaccacgttgctgaaacaacggtgtctgtcgtgaacttgccaaatgatgaaatg
aagggtcgaattattggtcgtgaaggacgaaacatccgcacattggaaacgctaacaggt
atagatttaattattgatgatactccagaagcggttattttatctggctttgaccctatt
cgtcgtgaaacggctcgacttgcacttgaaaagcttgtacaggatggccgtattcaccct
gctcgaattgaggaaatggtggaaaaagctcgtcgtgaagtggatgaacaaatccgtgaa
acaggtgagcaaacaacatttgaaattggcattcataacttacatcctgatttaatgaaa
attttaggccgtatgaaatatcgtacaagctatgggcaaaacgtcctaaaacattcaatt
gaagtcgcatatttggcaggattattagctgctgaacttggtgaagatgtagcattagct
cgtcgcgcaggcttattacatgatattggtaaagcaattgaccatgaagttgaaggtagc
catgtcgaaatcggtgtggaattagcaacaaaatataaagaacatccagtagtcattaat
agtattgcttctcaccatggtgatacagaagcaacatctgtcattgcagtattagtggct
gcagctgatgcattatcggctgctcgtccaggtgctcgtagtgagacactcgaaaactat
atccgcagacttgaaaaattagaagaaatttcagagagctatgaaggtgtagaaaaatcc
tatgcaattcaagctggtcgtgaaattcgaattattgtccaacctgaaaaaattgatgac
ttagcttcacatcgcttagcacgagatatccgtaagcgaattgaagaagagctcgattat
ccaggtcatatcaaagttactgtcattcgtgaaacacgtgctgtggagtacgcgaaataa
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