Lysinibacillus sp. B2A1: C3943_24380
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Entry
C3943_24380 CDS
T05347
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyb
Lysinibacillus sp. B2A1
Pathway
lyb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C3943_24380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyb03019
]
C3943_24380
03009 Ribosome biogenesis [BR:
lyb03009
]
C3943_24380
Enzymes [BR:
lyb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C3943_24380
Messenger RNA biogenesis [BR:
lyb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C3943_24380
Ribosome biogenesis [BR:
lyb03009
]
Prokaryotic type
rRNA helicases
C3943_24380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AVK86389
UniProt:
A0A2S0JSJ2
LinkDB
All DBs
Position
complement(4976738..4978267)
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AA seq
509 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTSDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHDALDVVAAALR
TLTKEPDDTPVTITEERPLPMRRERSSSSSNRGGDRGRNNRSFNGRRDSGRSGDRRGGGS
RRDGGGRREGGARREGGQGRSRAPRRHED
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagtgaatcaacattacgctctgttaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgctattgaaggccgc
gacgtattaggtcaagcgcaaactggtactggtaaaactgccgctttcgggattccactt
atcgaaaaaattgacccaaaaaatccaaatatccaagcattagtaattgctccaactcgt
gaattagcaattcaagtatcagaagagctttataaaattggttatgataaacgtgtgaaa
ttattatcagtttacggtgggcaagaaattggccgtcaaattcgtgcactgaaaaataga
cctcaaatcattgttggtacgccaggacgtattattgatcatattaatcgtcgtacgtta
aaattagaagatgtacaaacattagtactagatgaagcagatgaaatgttaaacatgggc
tttatcgatgatattaattcaatcttagaaaacgtgccttctgagcgtcaaacattactg
ttctcagcaacaatgccaccagctattcgcaaaattgctgaaacatttatgcgtgatcca
gaaatcgtaaaaattaaagcaaaagaattaacagttgataatattgatcaatattttgtg
aagtctgctgaacgcgaaaagttcgacgttttatctcgtttattaaacgttcaccaacca
gaacttgctatcatctttggacgtacaaaacgtcgcgtggatgagcttgcacaagcatta
tcaattcgtggctatcttgcagaaggtattcatggtgatttaagccaagcaaaacgtatt
tcggtattacgccaatttaaagaaaataaaattgatattcttgttgcgacagatgtagct
gctcgtggacttgatatttctggtgtaacacatgtttataattttgatattccgcaagat
cctgagtcatatgttcaccgtattggtcgtacaggtcgcgcaggtaaatcaggtcttgca
gtgacatttgtaacacctcgtgaaatgggttatttacgtattgtagaggaaacaacgaaa
aaacgtatgacaccacttcgtccaccgacttctgatgaagctcttgaaggtcaacaacgc
ctagcagtagagactctagaaggtcttatcgctaataacaatctaggtgattatcgtaca
tttgcagcagaattacttgaaaaccatgatgcacttgatgtagttgctgctgctcttcgt
acattaacaaaagagccagatgatacaccagtaactattactgaagaacgaccattacca
atgcgtcgtgaacgttcttctagttctagcaatcgtggcggagatcgtggacgtaataac
cgtagctttaacggacgtcgagatagcggacgtagcggagatcgccgcggcggcggaagt
cgtagagatggcggcggacgccgtgaaggtggtgctcgtcgtgaaggtggacaaggacgt
tcacgtgcaccgcgtcgtcacgaagattaa
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