Lysinibacillus sp. CD3-6: FH508_0000025
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Entry
FH508_0000025 CDS
T08381
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
lyc
Lysinibacillus sp. CD3-6
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyc03032
]
FH508_0000025 (gyrB)
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0000025 (gyrB)
Enzymes [BR:
lyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
FH508_0000025 (gyrB)
DNA replication proteins [BR:
lyc03032
]
Prokaryotic type
DNA Topoisomerases
FH508_0000025 (gyrB)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FH508_0000025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Phasin_2
GyrB_hook
Motif
Other DBs
NCBI-ProteinID:
UED80370
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Position
4257..6191
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AA seq
644 aa
AA seq
DB search
MEAVAIENEGLQDQAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDE
ALAGFCTDISVTIEKDNWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYK
VSGGLHGVGASVVNALSVETIVQVHREGHIHEIKFERGQTKQALTVIGETDHNGTTTRFK
ADPEIFKETTVYEFDILAHRIRELAYLNRGIRITIADEREDEVRSTTYHYEGGIRSYVEH
LNKSKEPIHEPIDVLGEKDGISIEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTAL
TRVINDYARKNGLLKEADANLTGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEVSQIT
NALFSDGFERFMLENPTVARKIIDKGLMAARARVAAKKAREFTRRKSALEVSSLPGKLAD
CSSTNPAECEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRA
MITAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLVDAGYIYIA
QPPLYQVKQGKHVEYCYDDIALQEILGRLSSMPKPVVQRYKGLGEMNAEQLWDTTMDPEH
RTLLQVELDDAIKANEAFERLMGDEVEPRRQFIEENAVYANLDI
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggaagccgtggctatagaaaacgaaggtttacaagatcaagcgtatgaagccgatcag
atacaggtattagaaggtttagaagcggttcgtaaaagaccagggatgtatattggttca
acaagttctaaaggtctccaccatttggtgtgggaaattgttgataatagtattgatgaa
gcacttgcaggattttgtactgatatctctgttacgattgaaaaagataactggattcgt
gtagaggataatggtcgaggaattcctgttagtattcaagaaaaaatgggtaaaccagct
gtcgaagtaattatgacagtactccatgcaggtggtaaattcggcggtggaggatataaa
gtatctggtggtcttcatggtgtaggggcctcggttgtaaatgctttatcagttgagaca
atcgttcaagttcatcgtgagggacatattcacgaaattaaatttgaacgtggtcaaacg
aaacaagcattaactgttattggtgagacagatcataacggaacaacaactcgttttaaa
gcagaccctgaaattttcaaagaaacaacagtttatgaattcgatattttagcacaccgt
attcgcgaactagcttatttaaatcgcggtattcgaattacaattgcagatgagcgtgaa
gatgaggtacgttctactacatatcattatgagggtggtattcgttcttatgtagagcac
ttaaataaatctaaagagcctatccatgaaccaattgatgttcttggtgaaaaggatggt
atttcaattgaaatagccatgcaatataatgcaggattttcatcgaatattttctcattc
gctaataatatcaatacgtacgaaggtggtacacatgagtctggctttaaaacagcactt
actcgtgttatcaacgattacgcacgtaaaaatggtttgttaaaagaagctgatgccaac
cttacaggtgaagacgttcgagaagggttaacggctattatatctatcaagcaccctgat
cctcaatttgaaggacaaacgaaaacaaagcttggtaactcagaggtaagccaaattacg
aatgcattattctcagatggttttgaacgatttatgttagaaaacccaacagtagcacgt
aaaattattgataaaggcttaatggctgctcgtgcacgtgtagcagcgaaaaaggcccgt
gaatttacacgccgtaagtcagcgcttgaagtatcaagtttgcctggtaaacttgcagac
tgttcttccacaaatcctgctgaatgtgaaatttacattgtagagggtgactctgctggt
ggttctgcaaaatctggacgtgaccgtcatttccaagcgattttacctttacgtggtaaa
attttgaacgtagaaaaagcacgattagataaaattttatcgaatgcagaaattcgcgca
atgattacagcattcggtactggtattggcgaggaatttaatttagaaaaagcccgttat
cataaaatcattattatgacggatgccgacgtagacggagcgcatattcgtacgttactg
ttaacattcttcttccgtttcctacgaccgcttgtagatgctggctatatttatattgca
cagccaccactatatcaagtgaagcaaggtaagcatgttgaatattgctatgatgatatt
gcgctacaagagattttaggaagattatcaagtatgccaaagcctgttgttcaacgttat
aaaggtcttggggaaatgaacgcagagcagctatgggatacaacgatggatccagagcac
cgcacattgttacaagtagagttagatgatgcaattaaagcaaatgaagcttttgaacgc
ttaatgggcgatgaagtagaacctcgtcgtcaattcattgaagaaaatgcggtatacgct
aatttagatatttaa
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