Lysinibacillus sp. CD3-6: FH508_0001915
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Entry
FH508_0001915 CDS
T08381
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03420
Nucleotide excision repair
lyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FH508_0001915
03430 Mismatch repair
FH508_0001915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0001915
Enzymes [BR:
lyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FH508_0001915
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FH508_0001915
MMR (mismatch excision repair)
Other MMR factors
FH508_0001915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD_C_2
UvrD-helicase
Viral_helicase1
AAA_19
AAA_30
DEAD
SLFN-g3_helicase
NACHT
ResIII
nSTAND3
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UED80674
LinkDB
All DBs
Position
complement(405416..407644)
Genome browser
AA seq
742 aa
AA seq
DB search
MTTQHPDFQAELERLAYTQNYMQQILNESQRDLQSAQENIRKSMADLDYLDSSLSYLNIL
TNARFFEMARNQKEGLEAVQKKPYFARIHFQKTGDPEEFLYIGKTSLFHRDTHEPIIVDW
RSPVANVYYDGRLGDMEYDVRGEIHKGHLFAKRQYKIEDGQLLDIRDIDLTTNDELLQEA
LAGKADVRLTEIVSTIQKEQNDIIRAHLRQPIIVQGAAGSGKTTIALHRISYFLYTMGEH
FNPEQLMILAPNKLFIDYIGDVLPELGVDKICQTTFSDYVLAATKLKLKLRNPNEQLESL
VIGGANQPTAWISEVKGSLYYRDMIERYLQKIELQIAEQFEDVFIEKYRIMRAAHLKKLF
LYEFSYMPIEKRLAHIKKVLASHVRQKKQAVLNMLHAKYDEALGKALNGIRDAEKRKHIV
TKFIDERDERMPAIEKEAKSTVSVYMRRFAKYNVKTLYRTLLTNAELLAEVAPEWHYLEQ
QQFLQAHAKEQWMLEDLAALYYLQARLKGIADEWKMRVVFIDEVQDYSLFQLAALKAGLE
TDMFTMVGDLAQGIHSYRSLTAWEPVQNLFPRASFRTLQKSYRTTIEIMEVANQILMQMD
EQLPLVEPVVRHGDAPTFIKAAAFNTEQIKEVFDRIRANGHQSIALICKTTAEAQLMQQA
LTADTFPCQLLTEDESINQQVLLVVPSHLAKGLEFDAVIVAAFDTPFFDTKIDRKLLYVA
LTRAMHELYLIGPSKKTFLLEH
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgactacacaacacccagattttcaggctgagctagagaggttagcgtacactcaaaat
tatatgcaacaaatcttaaacgaatcgcagcgtgatcttcaatctgcgcaagaaaacatt
cgtaagtctatggcagatcttgattatttagattccagtttaagttatttgaatatttta
accaacgcccgcttctttgaaatggctcgaaatcaaaaggaaggtttagaagccgttcaa
aaaaagccttattttgctcgaattcattttcaaaagacaggtgatccagaagaatttttg
tatatcggaaaaacatcgttgtttcaccgcgatacacatgaaccgattattgtagactgg
cgttcccctgtagcaaatgtctactatgatgggcgtcttggtgatatggaatatgacgtt
cgtggagaaattcataaaggccatttgtttgccaagcgacaatacaaaatcgaagatgga
caattactcgatattcgagatattgacttaacgacaaatgatgaattactccaagaggca
ttagcaggaaaagcagatgtacgcttaacagaaatcgtctctaccatccagaaagaacaa
aatgatattatccgcgcgcatcttcgtcagccaattatcgtgcaaggtgctgctggtagt
ggaaaaacaacaattgctttacaccgtatttcctacttcttatatacgatgggcgaacat
tttaatcctgaacaactgatgattttagcaccaaataagctatttattgattatatcgga
gatgtgctaccagagcttggcgttgataaaatatgccaaacaacattttcagattatgtc
cttgcagcaactaaactaaaattaaagctgcgcaatccgaacgaacagctagaatccctc
gtaataggtggcgctaatcagcctactgcttggatttctgaagtgaaaggttccctctat
tatcgcgatatgattgaacgatatttacaaaaaattgaactgcaaattgctgaacaattc
gaagatgtatttattgaaaaatatcgtattatgcgcgccgctcatttaaaaaagttattt
ttatatgaattttcttatatgccaattgaaaaacgactcgcacatattaaaaaggtgcta
gctagtcatgttcgacaaaagaaacaagctgtcttaaatatgttacatgcaaagtatgat
gaagcacttggcaaggcacttaatggcattcgtgatgcagagaagcgtaaacacattgtt
actaaatttatagatgaacgtgatgaacgaatgcctgcaattgaaaaagaagcaaaatcg
accgtctctgtttatatgcgccgctttgcaaaatataatgtgaaaacgctctatcgtacg
cttttaacaaatgccgagctattagccgaagtcgcaccagaatggcattatttagagcaa
cagcagtttttacaggcacatgctaaagagcaatggatgctagaggatttagctgctctc
tattatttacaagcccgactaaaagggattgcagatgagtggaaaatgcgcgtagtcttt
attgatgaagtacaggactacagtctattccaactagccgctctaaaagctgggctagaa
acggatatgtttacaatggtaggtgatttagcacaaggaattcacagctatcgctcacta
actgcttgggaacctgtgcaaaatttattcccgcgtgccagcttcagaacacttcaaaaa
agctatcgtacaaccattgaaattatggaggtcgctaaccaaattttaatgcaaatggat
gagcagttaccattagtggagcctgttgtccgccacggggatgcgccaacttttataaag
gcagctgcctttaataccgagcaaattaaagaggtttttgatcgcattagagcaaatggg
catcagtcgattgctttaatatgtaaaactacagctgaagcccaattaatgcaacaggct
ttaacagctgatacatttccttgtcaacttctcactgaggatgagtctattaatcagcaa
gtcttacttgtagttccaagccatttagcaaaaggactagaatttgatgcagttattgtg
gctgcctttgatacccctttctttgatactaaaattgatagaaagctcctttatgttgca
ttaactcgtgcaatgcatgagctttatttaattggtccctccaaaaagacttttttatta
gaacattga
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