Lysinibacillus sp. CD3-6: FH508_0002615
Help
Entry
FH508_0002615 CDS
T08381
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH508_0002615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyc03021
]
FH508_0002615 (rho)
03019 Messenger RNA biogenesis [BR:
lyc03019
]
FH508_0002615 (rho)
Transcription machinery [BR:
lyc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FH508_0002615 (rho)
Messenger RNA biogenesis [BR:
lyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FH508_0002615 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
AAA
AAA_22
AAA_25
DUF3418
AAA_24
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UED80804
LinkDB
All DBs
Position
568007..569290
Genome browser
AA seq
427 aa
AA seq
DB search
MSALTIAQLENMTLKELYALARQYKISYYSKLTKKELIFAILKTRSEQEGYFFMEGVLEI
VSQEGFGFLRPINYSPSKEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLQVDA
VNGEDPEVAKERVHFPALTPLYPDRQIKLETTQRNLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTSLLKEIANAITTNHPEAELIVLLIDERPEEVTDIERSVNADVVSSTFDEVPENHVK
VAEIVLERARRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GSARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRQLAERRIFPALDIR
RSGTRKEELLLEPEQLEKLWAIRKTFSDAPDFAERFLKKLRTTKSNEEFFEKLNEDMKKA
TKGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattgacaatcgctcaattagaaaacatgacgttaaaagagctttacgccctc
gcacgccaatacaaaatttcgtattatagcaaactaacgaaaaaggaattaattttcgct
attttgaaaacgcgttcagagcaagagggttatttctttatggaaggggtacttgagatt
gtttcgcaagaaggctttggcttccttcgtccaataaattactcaccaagtaaagaagat
atttatatttctgcttctcaaattcgtcgttttgaccttcgtaatggggataaggtgtct
ggtaaagtacgcccacctaaagaaaatgaacgctactatggcctactacaggtggatgct
gtaaatggagaagaccctgaagtagcaaaagaacgtgttcacttcccagcgttaacgcca
ttatatcctgatcgacaaattaagcttgaaactactcagcgtaatctatcaactcgaatt
atggatttagtagcaccagtaggatttggtcaacgtggtttaatcgttgcgccgccaaag
gctggtaaaacatcgttacttaaagaaattgccaacgccattacaacgaatcatcctgag
gctgaattaatcgtcctacttatcgatgagcgccctgaggaagtaacggacattgagcgt
tctgtaaatgcggatgtcgtgagttctacattcgatgaagtaccagaaaatcatgtgaag
gtagctgaaatcgtattagaacgagcacgccgtttagtagaacataaacgtgacgttatt
attttaatggactctattacgcgtcttgcacgtgcttacaacttagtgattccaccgagc
ggacgtacgctttctggtggtatcgaccctgctgccttccatagaccaaaacgattcttc
ggttctgctcgtaatatcgaagaaggtggtagcttaacaattttagctacagctttagta
gatacaggatcacgtatggatgaagtaatctatgaagaatttaaagggactggtaactta
gagttgcacctagaccgacaattagcagagcgtcgtattttccctgcgcttgatattcgt
cgttcaggtacgcgtaaggaagaattacttcttgaaccagaacaacttgagaaactatgg
gcaattcgaaaaacattttccgatgccccagattttgcagagcgtttcttgaaaaagctg
cgcactacaaaatcaaacgaagaatttttcgaaaagttaaatgaagatatgaaaaaagcc
actaaaggtaaagggcttctttaa
DBGET
integrated database retrieval system
