Lysinibacillus sp. CD3-6: FH508_0004535
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Entry
FH508_0004535 CDS
T08381
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH508_0004535 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyc03019
]
FH508_0004535 (rnjA)
Messenger RNA biogenesis [BR:
lyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FH508_0004535 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
RMMBL
DUF4453
CFAP54_N
DUF5548
Motif
Other DBs
NCBI-ProteinID:
UED81162
LinkDB
All DBs
Position
complement(974036..975703)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQAAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDDLLGIDYVIPDYTYL
VRNVDKIKGLFITHGHEDHIGGIPYLLRQVNVPVYGGKLALGLLRNKLEEHGLLRTTKLI
EIKEDDVIKFRKTSVSFFRTTHSIPDAYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTK
MAEIGRDGVLCLLSDSTNAEKPNFTMSERTVGKSIDEIFRKVDSRIIFATFASNIHRLQQ
ATDAAIKYGRKIAVFGRSMDNAITIGRELGYINAPKDTFIDAQSINRLPANEVMILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPVPGNTVSVNKIINLLFRAGAEVIHGAL
NNIHTSGHGSQEEQKLMLRLMKPKFFMPIHGEFRMLKMHTHLAEDCDVPLENTFVMENGD
VLALSANEAHVAGRIPSGDVYIDGNGIGDIGNIVLRDRRILSEEGLVIVVVSVDMENQKI
VSGPDIISRGFVYMRESGTMINEAQKMLNRHLNETIQSKTPQWTELKNEITDVLGPYLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgttaaaaatgaccaagcagctgttttcgcgctcggcggactgggcgaaatc
ggcaaaaacacttacggcgttcaatttcaagatgaaatcatcttaattgacgccggaata
aaatttccagaagacgatttactcggaatcgactatgttattcctgattacacgtattta
gtacgaaacgtcgataaaattaaagggttatttataacacacggacacgaagaccatatt
ggtggtatcccttatttactacgtcaagtgaatgttcccgtttatggtggtaagcttgca
cttggcttattgcgcaacaaacttgaagaacatggtttactacgtacaactaaactaatc
gaaattaaagaagatgatgttattaaatttagaaaaacatctgtaagcttctttagaaca
acgcatagtattccagatgcttatggtatcgtcgtaaaaacacctcctggcaatatcgtg
catacaggtgactttaaattcgactttactccagtaggcgagccagcaaacttaacaaaa
atggccgaaatcggtcgtgacggtgtgctgtgtctactatctgatagtacgaatgctgaa
aaaccaaatttcacaatgtctgaacgtacagttgggaaaagtattgacgaaatcttccgc
aaggttgatagtcgtattattttcgcaacattcgcatcaaatattcaccgtttgcaacaa
gcaacagatgcagccataaaatacggacgcaaaatcgccgtattcggtcgatctatggat
aatgccattacaatcggtcgtgaacttggttatatcaacgcaccaaaagatacatttatt
gatgcccaaagcattaaccgtttacctgccaacgaagtgatgattttatgtacaggctct
caaggtgaaccaatggcagctctatctcgcattgccaacggtacacaccgtcaaattcaa
atccagcctggggacacagttgtcttctcttcttcacctgtaccaggtaatacagttagc
gtaaataaaatcattaatttacttttccgtgctggcgctgaagttattcacggtgcatta
aataatatccatacatctggtcatggatcacaagaagaacaaaagctaatgcttcgatta
atgaaaccaaaattctttatgcctattcacggtgaattccgtatgttaaaaatgcataca
catttagcagaagattgtgatgtgccacttgaaaatactttcgtaatggaaaatggtgat
gtacttgcattaagtgcaaatgaagcacatgttgcaggtcgtattccttctggcgatgta
tatattgatggtaacggcattggagatattggtaatatcgtactgcgcgaccgccgtata
ctttccgaagaaggtttagtaatagtggttgtaagcgtagatatggaaaaccaaaaaatt
gtttctggtcctgatattatttcacgtggatttgtttatatgcgtgaatcaggtacgatg
attaatgaagcacaaaaaatgctgaaccgtcatcttaacgaaaccattcaaagcaaaacg
ccacaatggactgagcttaaaaatgaaattacagacgttttagggccttacttattcgag
aaaactaaacgtcgtccgatgattttaccgattattatggaagtataa
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