Lysinibacillus sp. CD3-6: FH508_0005420
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Entry
FH508_0005420 CDS
T08381
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lyc
Lysinibacillus sp. CD3-6
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyc03032
]
FH508_0005420 (topA)
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0005420 (topA)
Enzymes [BR:
lyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FH508_0005420 (topA)
DNA replication proteins [BR:
lyc03032
]
Prokaryotic type
DNA Topoisomerases
FH508_0005420 (topA)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FH508_0005420 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
DUF2996
Toprim_3
MetOD1
DUF7366
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UED81329
LinkDB
All DBs
Position
1165299..1167377
Genome browser
AA seq
692 aa
AA seq
DB search
MADYLVIVESPAKAKTIERYLGKKYKVKASVGHVRDLPRSQMGVDTENNYEPKYITIRGK
GPVLQELKSAAKKVKKVYLAADPDREGEAIAWHLATALNIDINSDCRVVFNEITKDAILE
SFKNPRAINMDLVDAQQTRRMLDRLVGYNISPILWKKVKKGLSAGRVQSVALRMIIDREN
EIKNFQPEEYWTIEGSFEKGKKTFDALYYGNGKDKIKLTNEEQVKSILKNVKGTAFEVVN
VTKKERKRNAAPAFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDIGKKEGTVGLITYM
RTDSTRISETAKAEAVSYIETKYGKEYISTETKQVKKASNAQDAHEAIRPTSTMRSPEEL
KTVLSRDQLRLYRLIWERFIASQMAPAVLDTVAVDLQHGDVLFRANGSQVKFAGFMKLYI
EGTDDQTEETTKLLPEMEIGDQVKSLEIEPKQHFTQPPPRYSEARLVKTMEELGIGRPST
YAPTLDTIQRRGYVVLDAKRFMPTELGEIVHQQMLEFFPDIINIEFTAKMEQDLDDVEEG
SRKWVEVIDDFYKDFEVHVKHADAEMEKVVIKDEPAGEDCEKCGSPMVFKLGRYGKFMAC
SNFPDCRNTKAIMKPIGVKCPSCETGEIVERKSKTKRLFYGCNQYPECEFVSWDKPISRP
CPKCSALLVEKKLKKGVQIQCTKCDYEETPTQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcggattatttagtgattgtagaatcaccagcaaaagcaaaaacaattgaacgttat
ttaggaaaaaaatacaaagtaaaagcatcagtcgggcatgtgcgtgacttaccacgtagc
caaatgggcgtagatactgaaaataattatgaacctaaatatattacaattcgtggtaaa
ggacctgtattacaggaacttaagtctgcggctaaaaaagtgaagaaagtctatctagcg
gccgatccagaccgcgagggagaagcgattgcttggcaccttgcgactgcattaaatatt
gatattaactcggattgtcgagtagttttcaatgaaattacaaaggatgcaattttagaa
tcctttaaaaatcctcgtgctataaatatggatttagtagatgcacagcaaactcgtcgt
atgctcgatcgacttgtaggctataatataagcccaattctttggaaaaaggttaaaaag
ggcttatctgcggggcgtgtgcaatccgtagcattacgtatgattattgaccgtgaaaac
gaaattaaaaacttccagccagaagagtattggacaattgaaggttcttttgaaaagggc
aagaagacatttgacgcactatactacggtaacggcaaagataaaataaaattaacgaat
gaagagcaagtaaagtccattttaaaaaatgttaaaggaacagcatttgaagtcgtaaat
gtgacgaaaaaagagcgtaaacgaaatgccgcacctgcttttactacatcttctttacaa
caagaagcagcgcgtaagctaaatttccgtgcgaaaaaaacgatgatgcttgcgcagcaa
ttgtatgaaggtattgatattggtaaaaaagaaggtactgtcggtttaattacctacatg
cgtacagattcaacgcgtatatcagaaactgctaaggcggaagcggtttcgtatattgag
acaaagtacggaaaagaatatatttcgacagaaacaaagcaggttaaaaaggcgtccaat
gcacaagatgcccatgaagcaattcgtcctacaagtacgatgagatcaccagaagagtta
aaaacagtacttagtcgcgatcaactacgtttataccgtttgatttgggagcgctttatt
gcaagtcaaatggcacctgctgtattagatacagttgcagtagaccttcaacatggtgat
gttttattccgagcaaatggctcacaagtcaaatttgctggatttatgaaactatatata
gaaggtacggatgatcaaacagaggaaacgacgaaacttctacctgaaatggaaattggc
gatcaggtgaaatcacttgaaattgagccaaagcaacactttacgcagccaccaccacgt
tattctgaggcgcgacttgtgaaaacgatggaagagttaggaatagggcgaccatcgaca
tacgcaccgactcttgatacgattcaacgccgtggctatgttgtgctcgatgccaaaaga
tttatgccgacagagcttggtgaaatcgtccatcaacaaatgctggaatttttccctgat
ataataaatatcgaatttacagcaaaaatggaacaagatctggatgatgttgaagaaggt
agtcgtaaatgggttgaagtaatcgatgatttttataaagacttcgaggttcatgttaag
catgcagatgctgaaatggagaaagtagtcattaaagatgagccagctggtgaggattgt
gagaaatgtggttcaccaatggtattcaagctaggtcgttatgggaaatttatggcctgc
tcgaacttcccagattgccgtaacacaaaagccattatgaagccaattggggttaaatgt
ccttcttgtgaaacgggcgaaattgtggaacgcaaaagtaaaactaagcgcttgttttat
ggatgtaatcaatatccagagtgcgaatttgtttcatgggacaagccgattagtagacca
tgtccgaaatgtagtgcattattagtagagaaaaaattaaaaaaaggtgtgcaaattcag
tgtacgaaatgtgactatgaagagacaccaactcaatga
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