Lysinibacillus sp. CD3-6: FH508_0015830
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Entry
FH508_0015830 CDS
T08381
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lyc
Lysinibacillus sp. CD3-6
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyc03019
]
FH508_0015830
03009 Ribosome biogenesis [BR:
lyc03009
]
FH508_0015830
Enzymes [BR:
lyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH508_0015830
Messenger RNA biogenesis [BR:
lyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH508_0015830
Ribosome biogenesis [BR:
lyc03009
]
Prokaryotic type
rRNA helicases
FH508_0015830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UED78912
LinkDB
All DBs
Position
complement(3167840..3169141)
Genome browser
AA seq
433 aa
AA seq
DB search
MSKYTDYNFQPFLQDAIAKLGFTEPTPIQKEIIPLILKGKSAIGQAHTGTGKTHSFLIPI
VQRIQVDKQEVQAVITSPTRELAQQIFDALNQLIEGTEIQAKLFIGGTDKQRSIDKLKTQ
PQIVVGTPGRIRDLVSAQALFVHTAPILVVDEADLAFDMGFIEEIDGFASQMPEKLEMFV
FSATIPERLQPFLKKYMEAPVHIHMNDKRPVAEGIDFVLVPVRSKSRNKRLLDVIEGINP
FLAVIFTNTRKTAEHVAGYLNEQGIRCGQIHGDLTPRDRKKMMKQIRDLEYQYIVATDLA
ARGIDIQGISHVINYEIPEDLEFFIHRVGRTARAGNKGTAITLFEPSDEDALARVEKMGI
PFEQKDVKDGEWSELKERHARKNRVKHENEIDVKAKSLVRKPKKVKPGYKRNMKWEMEKI
KKRERRIKARGKK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatatactgattataattttcagccatttttgcaggacgcaattgcaaaactt
ggcttcacagaaccaacaccaatacaaaaggaaattattccgctaatacttaaaggtaaa
agtgcgattggtcaagcacatacaggtacagggaaaacacatagtttccttattccgatt
gtgcaacgtattcaagttgacaagcaagaagtacaagctgttattacttcgccaacacga
gagcttgctcaacagatttttgatgcgttaaatcaattaatagaaggaacagagattcaa
gcgaaattatttattgggggtacggacaaacaacgctccattgataagttaaaaacgcaa
ccacaaatcgttgttggtacaccaggacgtattcgtgatcttgtttcagctcaagcgtta
tttgtgcatacggcaccaattttagtggtagacgaagcggacctagcgttcgatatgggc
tttatcgaagagattgatggctttgcttctcaaatgccagaaaagcttgaaatgttcgta
ttctctgcaacaattccagaacgtctacagccatttctaaaaaaatacatggaagcacct
gtacacattcatatgaacgataagcgtccagtagcagaaggtattgactttgtgctagtg
cctgttcgttcgaaatcacgcaacaaacgtttactagatgtcattgaaggcattaacccg
tttttagcggttatttttactaatacacgtaaaacggcagagcatgttgctggttattta
aacgagcaagggattcgctgtggtcaaatacatggtgatttaacaccgcgtgatcgtaaa
aaaatgatgaagcaaattcgtgatttagaatatcaatatatcgtggcaacagatcttgct
gcgcgtggtatcgatattcaagggatttcacatgtcattaactatgaaattccagaagat
cttgaattctttattcaccgtgttggtcgaacagcacgtgcgggtaataaaggtacggcg
attacattatttgagccttcagatgaggacgcattggctcgtgttgagaaaatgggtatt
ccatttgaacaaaaggatgtcaaagacggtgaatggtctgaactaaaagaacgtcatgcc
cgtaaaaaccgagtgaagcacgaaaatgaaattgatgtaaaagcaaaatctttagtgcgc
aaaccgaaaaaagtaaaaccaggctacaaacgtaatatgaaatgggaaatggaaaaaatt
aaaaaacgcgaacgtcgcataaaagcacgcggcaaaaaataa
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