Lysinibacillus sp. CD3-6: FH508_0018020
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Entry
FH508_0018020 CDS
T08381
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03030
DNA replication
lyc03430
Mismatch repair
lyc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FH508_0018020 (dnaE)
03430 Mismatch repair
FH508_0018020 (dnaE)
03440 Homologous recombination
FH508_0018020 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyc03032
]
FH508_0018020 (dnaE)
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0018020 (dnaE)
Enzymes [BR:
lyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FH508_0018020 (dnaE)
DNA replication proteins [BR:
lyc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FH508_0018020 (dnaE)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FH508_0018020 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Gemini_AL1
Motif
Other DBs
NCBI-ProteinID:
UED79327
LinkDB
All DBs
Position
complement(3611860..3614943)
Genome browser
AA seq
1027 aa
AA seq
DB search
MTHVYTQMHTSADLLKSTIRLEQLIPFLQEQNTQACAIVNSKLYGLLPFCKAMQQANMHA
VIGLSVKVQWDNNIIPLVLYAQTQQGYQHLLKISSAVSIREDEVLPWRWLEGYAKGCIAL
LSANDIAEIVEWAEITSALQQVFGKRLYVGMARPGGIIADNEAMISQWCETKGILIVATQ
RCYFLRPEDHFAYEVARAIDTGEKLQDTMLTAHLENYYAPTEEQWKSWFSNRPEWIEASV
DMLASCVAKIPEMHVQMPKFPLQEGETAESLLVKETFSGLANRLKLTEVPAIYRDRLQYE
LEIICSMGYADYFLIVADFMRYAKEHRILTGPGRGSSASSLVAFSLSITQVDPLAYGLLF
ERFLNPERVTLPDIDIDFVDSKRQQVIQYVAQKYGKANVAQIITFGTLSAKAVARDVARV
FGFDAEVMEKISKMIPNKPGITLQRAVAESQSFQSWLAEDEYHRRWLDIALKLEGLPRNS
STHAAGIVLAPTPLVDTVPIEDGHEGIYCTQWPMGDVEASGLVKMDFLGLRNLTILEQVR
WSIYKAGGPWIEFDLIPMHDELTFQLLQKGDTVGIFQLESDGMKEALRDIHPTHFSDIVA
VNALYRPGPMEFIPVYARRKAGQERVTMPHPLLEPILSETYGVIVYQEQIMQIAATMAGF
TMGQADLLRRAVSKKNRDILEEQRTAFVDGALRQGFDRRDAEGVYELIVRFADYGFAKSH
AVAYSVISYHMAYLKAHYPQSFYAALLTNATGNVEKIQQLVAEAKEKGMAFYPPSLLQST
KFFKVEKDGIRYSLSGIKGVPHTFIEKLVTLRKTNPEALHNLFDLAVALSAQHFKPNIME
SLVRAGVLDYLEKDRAVLVATLEAALKQAELVRPTEDVDIETATAFNFGKPKYMQAEAMS
QKEKLQHEKESLGFYISAHPVSEARSYWGEGTVTCADLKYTREGTYVKMIGLIEEVKKIR
TKKGEQMAFVQLQDEFGIVSVTLFPQVFQLVQDILIEDELLYIEGTLEKRFGKSQVKVKH
AQSTKKI
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
ttgacacatgtatatacacaaatgcatacgagcgcggatttattaaaaagcacgattcgg
cttgaacaattgatcccttttttacaagaacaaaatacgcaggcctgtgcaattgtcaat
tcgaaattgtacgggcttttacctttttgtaaagcgatgcagcaggcaaatatgcacgcg
gtaatagggctttcggtgaaggtacaatgggataataacataataccgctcgtgttgtat
gcacaaacacagcaaggctaccagcatcttttaaagattagtagtgctgtttctattcga
gaagacgaggtattgccttggagatggcttgaaggctatgcaaagggctgtatagcgttg
ctttcggcgaatgatatagcggaaatagtagaatgggcagaaataacaagtgctttacaa
caagtatttggtaagcgtctatatgtaggaatggcaagaccaggtggcataatagcagac
aatgaagctatgatttcacagtggtgcgagacaaaaggtattttaattgtagctacacag
cgttgttattttttacgaccagaggatcattttgcatatgaagttgctagagctattgat
acaggggaaaagcttcaagatacgatgctaacagctcatttagaaaactattatgcgccg
actgaggagcagtggaagagttggttttcaaatcgccctgaatggattgaggcaagtgtc
gatatgttagctagctgtgttgcaaaaattcctgaaatgcatgttcaaatgccaaaattt
ccgctacaagagggtgaaacagccgaaagtttgcttgtaaaagaaacgttttcaggatta
gctaatcgtttaaaactaacagaggttccagcaatttatcgagatagactgcaatatgag
ttagaaattatatgctcaatgggctatgctgattattttttaattgttgcagattttatg
cgttatgccaaagagcatcgcattttaactgggccaggtcgtggttcttcagcaagttca
ctagttgcatttagtctttctatcacacaggtagatccacttgcctacggattattgttt
gaacgatttttgaatcctgaacgtgtaacattacccgatattgatattgactttgttgac
agcaaaagacaacaagtaattcaatacgttgcacaaaaatatggcaaggctaatgttgcg
caaatcattacttttggtactttatcagcgaaagcagtggcgagagatgtagcgcgtgtt
tttggttttgatgctgaagtgatggaaaaaatatcgaaaatgattccaaacaaaccaggc
ataacgttgcaaagagctgtagcagaatcccaaagctttcaaagttggttggctgaagat
gaataccatcgacgttggcttgacatagctctaaaattagaaggtttgccgagaaattcc
tctacccatgcggctggcattgtattagcgccaacgccattagtagatacagttccaatt
gaggatggacatgagggaatttattgtacccagtggccgatgggagatgtagaagcaagt
ggtcttgtaaagatggattttttagggttgcgtaatttaaccattttagagcaagtacgt
tggtctatttacaaagcagggggaccatggatagagtttgacctaatccctatgcatgac
gagcttaccttccaactgcttcaaaaaggagatacagtaggtattttccaattagaatca
gatggcatgaaagaggcattacgtgatattcatccaacacatttttcagatattgttgca
gtcaatgctctttatcgtccagggccgatggaattcattcctgtttatgcaagaagaaag
gcggggcaagaacgtgtaacgatgccacatccgttattggagccgatattaagtgaaaca
tatggcgtcattgtctatcaggagcaaattatgcaaattgcagcgacgatggctggtttt
acgatggggcaggcggacttattacgtcgggcagttagtaaaaaaaatcgtgatatatta
gaggagcaacgtactgcctttgtagatggcgcattgaggcaaggttttgatcggcgagat
gcagagggcgtctacgagctaattgtacgctttgccgactatggctttgcaaaaagccat
gcggttgcctatagcgtcatctcgtatcatatggcgtatttaaaggctcattacccgcaa
agcttttatgcagcattattaaccaatgcaacagggaatgtagaaaaaattcaacagctt
gttgcggaagcgaaggaaaaaggaatggcgttttatccgccatctttattgcaaagtact
aaattctttaaggtggaaaaggatggcattcgttatagcttatcgggcataaaaggtgta
ccgcacacatttatagagaaattagtgacgttgcgtaaaacgaatccagaggcacttcat
aatttatttgatttggctgtcgctttaagtgcacaacattttaaaccgaatattatggaa
tccttagttcgtgcaggggtgcttgattatttagagaaggatcgtgctgtactggtggcc
actttagaggcagcattaaaacaggcagagcttgtgcgtccaacagaggatgtcgatata
gaaacggcgaccgcttttaattttgggaaaccgaagtatatgcaagctgaagcgatgtct
cagaaagaaaagcttcagcatgagaaagaaagtttaggcttttatatttctgcgcatcct
gtttctgaagcaagaagttactggggagaaggtactgtaacctgtgctgacctgaagtat
acacgtgaagggacgtatgtaaaaatgattggcttgattgaggaagtgaaaaaaataagg
acaaaaaaaggagagcaaatggcctttgtccaactccaagatgaatttggaatcgtatca
gtaaccttatttccacaagtctttcaactcgttcaagatatcttaatagaagatgaactg
ctgtatattgagggtactcttgaaaaacgttttggtaaatcgcaagtgaaagtaaaacat
gcacaatcgactaaaaaaatatga
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