Lysinibacillus sp. CD3-6: FH508_0021130
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Entry
FH508_0021130 CDS
T08381
Symbol
pcrA
Name
(GenBank) DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03420
Nucleotide excision repair
lyc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FH508_0021130 (pcrA)
03430 Mismatch repair
FH508_0021130 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0021130 (pcrA)
Enzymes [BR:
lyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FH508_0021130 (pcrA)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FH508_0021130 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
FH508_0021130 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PcrA_UvrD_tudor
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
AAA_11
ResIII
AAA_22
DEAD
Motif
Other DBs
NCBI-ProteinID:
UED79856
LinkDB
All DBs
Position
complement(4240053..4242305)
Genome browser
AA seq
750 aa
AA seq
DB search
MEHLTKNLLVGMNPEQEKAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLIIEKEVYPSKIL
AITFTNKAAREMRERIDGILGNGTGDSMWVSTFHSMCVRILRRNIEQLGISRNFSILDST
DQLSVIKNVLKDENIDPKRFEPRAILNAISSAKNECITADEYAGQINENNPYEKTVARVY
KGYEKRLRRNQSLDFDDLIMTTITLFKRVPEVLEFYQNKFQYIHVDEYQDTNKSQYLLVQ
LLAKKFKNICVVGDSDQSIYRWRGADIGNILSFEKDYPNAKVIMLEQNYRSTKRILQAAN
DVIQHNTSRYPKELRTENAHGEKIALYKAYNEQEEAQFVVQTIQQLMEKDNRSFDDFAIL
YRTNAQSRVMEEVLVKSNMAYQIVGGTKFYDRKEIKDLLAYLRLIANNDDDLSLARIINE
PKRSIGATSFEKMARYAIDQDRSIFDAMNDLVFMGLTGKAAASAEHFYAMIKGFTEMQNY
LSVTEIVEQVIEKSGYRAMLQNEKSIEAESRLENIEEFLSVTKSFEERSEDKSLIAFLTD
LALIADIDALDKEDASKGNIILMTMHAAKGLEFPVVFIIGMEENIFPHSRSLDDNDEMEE
ERRLAYVGITRAEERLYLTCAQSRTIFGRSSFNNASRFLREISEDILESISKGGTRPEVP
FASSNRSASGYQKRTLGAQQHTQPATARLQATGGDQFGWKAGDKAVHKKWGTGMVVSVKG
EGDSTELDIAFPQPIGIKRLLAQFAPIEKA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atggagcatttaacaaaaaatttattagtaggaatgaaccctgaacaagaaaaagcagtg
aaaacaacagaagggccattacttattatggcaggtgctggttcgggaaaaacaagagta
ttaacgcatcgtattgcgtatttaatcatagaaaaagaagtatacccatcgaaaatttta
gccattacgttcacgaataaagcagctcgtgaaatgcgcgagcgtatagatggtattctc
ggaaatggaacaggcgacagcatgtgggtatcaacatttcactcgatgtgtgtacgcatt
ttacgacgcaatattgagcagctgggtatctcgcgcaacttctcgattttagattctact
gaccaactttctgtcataaagaatgtcttgaaggatgaaaatattgaccctaagcgtttt
gaaccacgtgcaatcttaaatgctattagttcagcaaaaaatgaatgtataactgcagat
gaatatgcagggcaaataaatgaaaataatccatatgaaaaaacggtagcgcgtgtttat
aaaggatatgaaaaaagattacgacgcaatcaatcacttgattttgatgatttgataatg
acgacgattactttatttaagcgagtaccagaagtacttgaattttatcaaaataaattt
caatatatccatgttgatgaataccaagatacaaataaatcccaatacttacttgtgcaa
ttacttgcgaagaaattcaaaaatatttgcgtagtaggggattcagaccaatccatttat
cgttggcgcggagcggatattgggaatatcctgtcctttgaaaaggattatccaaatgca
aaggttattatgctagagcaaaattaccgctcaacaaaacgcatccttcaagctgcgaat
gacgtcattcaacataacacaagccgttacccaaaagagctgcgcacagaaaacgcacat
ggtgaaaaaattgctttgtacaaggcttataatgagcaggaagaagctcagtttgtcgta
caaacaatccaacagctgatggaaaaagataatcgttcattcgatgactttgccattttg
tatcgtacgaatgcacagtctcgtgtaatggaggaagtgttagttaagtccaatatggct
tatcaaattgtcggtggtacaaagttctatgaccgcaaagaaattaaagatttattagct
tatttacgtctcattgcgaacaatgatgatgatttatcacttgcgcgtattattaatgaa
ccgaagcgaagtattggtgctacctcatttgaaaaaatggcgcgctatgcaatcgatcag
gatcgctctatttttgatgcgatgaatgatctcgtgtttatgggattaacagggaaagct
gctgcttcagcagaacatttttatgcaatgattaaaggctttactgaaatgcaaaattac
ttgtccgttacggaaatcgtagagcaagtaatagagaaatcaggctatcgagcaatgtta
caaaacgaaaagagcattgaagcggaaagtcgtttagaaaatattgaagaatttttatct
gtgacaaaatcatttgaagaacgtagtgaagataagagcttaattgccttcttaactgat
ttagcactaattgcagatattgatgcgcttgataaggaagatgcatctaaaggcaatatc
attttaatgacgatgcatgccgctaaaggattagagttccctgttgtattcattattggt
atggaagaaaatattttcccgcattctcgttctttagatgataatgatgaaatggaagag
gaaaggcgccttgcttatgtcggcataacgcgagcagaggaacggttgtatttaacatgt
gcacaatctcgaacgatttttggtcgttcaagctttaacaatgcttcccgtttcttacgt
gaaatttcagaggacattttagagtccatctccaaaggtggtacgagacctgaagtaccg
tttgcatcaagtaatcgttcggcaagtggttatcaaaaacgtacacttggcgcgcaacag
catacacaaccagcaacagcacgcctgcaagcaactggaggtgaccagtttggttggaaa
gctggagataaagcggttcataaaaaatggggaacaggtatggttgtaagcgtaaaaggt
gagggtgatagtacagaacttgatatcgcttttccacaaccaattggtattaagcgatta
ttagctcaatttgcacctattgaaaaagcgtaa
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