Lysinibacillus sp. CD3-6: FH508_0021725
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Entry
FH508_0021725 CDS
T08381
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH508_0021725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lyc03019
]
FH508_0021725
03009 Ribosome biogenesis [BR:
lyc03009
]
FH508_0021725
Enzymes [BR:
lyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH508_0021725
Messenger RNA biogenesis [BR:
lyc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH508_0021725
Ribosome biogenesis [BR:
lyc03009
]
Prokaryotic type
rRNA helicases
FH508_0021725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UED79957
LinkDB
All DBs
Position
complement(4371365..4372909)
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AA seq
514 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNK
PQIIVGTPGRILDHINRRTLKLEDVQTLVLDEADEMLNMGFIEDINSILENVPAERQTLL
FSATMPPAIRKIAETFMREPEIVKIKAKELTVDNIEQFFVKAAEREKFDVLSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTNDEALVGQQRLAIETLEGIISTNNLGDYRTLATEVLENHDAIDVVAAALR
SLTKEPDDSPVTITEERPLPMRRERSGGGGGRGGDRNGRNRNGGGRSYGGNRREGSGGGD
RRNSGGRREGGRREGGARREGGQGRSRAPRRHED
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgttcagtaaaacgtatg
ggattcgaagaagcaacaccaatccaagagggaactattcgttttgccattgaaggtcgc
gatgtattaggtcaagcgcaaactggtacaggtaaaactgccgcttttggtattccactt
atcgagaaaatcgatcctaaaaaccctaatatccaagcattagtaattgctccaactcgt
gaattagcgattcaagtttcagaagaactatataaaatcggttacgacaagcgtgtgaaa
ttattatcagtttacggtggtcaagaaatcggccgtcaaattcgtgcactgaaaaataaa
ccacaaattattgttgggacaccaggtcgtattttagaccatattaatcgtcgtacttta
aaactagaagatgttcaaacacttgtattggacgaagcagatgaaatgttaaacatgggc
ttcatcgaagacattaactcaattttagaaaacgtacctgctgagcgtcaaacattatta
ttctcagctacaatgccaccagcaatccgtaaaattgctgaaacatttatgcgtgaacct
gaaattgtaaaaattaaagcaaaagaattaacagtggataacattgaacaattttttgta
aaagctgctgaacgtgaaaaattcgatgttttatctcgtctattgaatgttcaccaacca
gaattagcaattatctttggacgtacaaaacgtcgcgtagatgagttagcacaagcttta
tcaatccgcggataccttgctgaaggaattcacggtgatttaagccaagcaaaacgtatt
tcagtattacgtcaatttaaagaaaataaaattgatatcctagttgcaacagatgttgcc
gctcgtggtcttgatatttcaggcgttacacatgtatataactttgatattcctcaagac
cctgagtcttacgttcaccgtatcggtcgtactggccgtgcaggaaaatcaggtcttgca
gtaacgtttgtaacacctcgtgaaatgggttatttacgtatcgttgaagaaacaacgaaa
aaacgtatgacaccacttcgtccaccaacaaatgacgaagctttagtaggtcaacaacgt
ttagctattgagacgcttgaaggtattatttcaactaataacttaggtgattatcgtaca
ttagctacagaagttcttgaaaaccatgatgcaattgatgtagtagctgctgcattacgt
tcattaacaaaagagccagatgattcgcctgttacaattacagaagaacgtccattacca
atgcgccgtgagcgttctggtggcggcggcggtcgcggtggtgatcgtaacggtcgtaac
agaaacggtggcggtcgtagctatggcggtaaccgtcgtgaaggtagtggtggcggagat
cgtcgcaacagtggaggccgtcgtgaaggtggtcgtcgcgaaggcggagctcgccgtgaa
ggtggacaaggtcgttcacgtgcaccacgtcgtcatgaagactaa
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