Lysinibacillus sp. CD3-6: FH508_0023060
Help
Entry
FH508_0023060 CDS
T08381
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FH508_0023060 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyc03021
]
FH508_0023060 (rpoC)
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0023060 (rpoC)
Enzymes [BR:
lyc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FH508_0023060 (rpoC)
Transcription machinery [BR:
lyc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FH508_0023060 (rpoC)
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FH508_0023060 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF7033
Motif
Other DBs
NCBI-ProteinID:
UED80196
LinkDB
All DBs
Position
complement(4621801..4625487)
Genome browser
AA seq
1228 aa
AA seq
DB search
MIDVNEFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFASYVVIEPGATNLESKQLLSEKEYRAYREKFGATFEAAMGAEAIKRLLG
KIDLEDETHSLKEELKSAQGQRRTRAIKRLEVVESFRNSGNSPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLNNDVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDARGEGSIFYGPNEVLIAYDTGHVHLHTRIAIK
ASSLNNPTFTEEQNNMFLLTTVGKVIFNEILPESFPFINEPTDFNLEQVTPEKYFANLTI
DEETLAELEADAAYSQLDEKGKVEAQRSAVLRKHFASVPVVNPFRKKFLGNIIAEVFKRF
HITETSKMLDRMKNLGFKYSTRAGITVGVSDIVVLPDKGEILAEAQEKVDKVQAQFRRGF
ITEEERYDRVISSWSAAKDEIQSKLMKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLM
ANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDV
IVREDDCGTDRGLTIGALMEGTELIEALDERIVGRHTKKTIFHPETGDVILEKDGLIDQD
VARVITEAGIEEVTIRSAFTCNTKHGVCKKCYGMNLATGEKVEVGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQSVISEIAGTVSDITEIREGLKEI
TVQGDVETRKYQAPYNARLKVIEGDSIERGQVLTEGSIDPKQLLKVKDVSTVQEYLLKEV
QKVYRMQGVEIGDKHIEVMVRQMLRKVRVIEAGDTELLPGSLLDIHQFSEANVDAVMNGK
NPATCRPVILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLV
PAGTGMQRYRQIRIEKDELDAEDLVSAE
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaatgaatttgaatatatgaaaattggtttagcatcccctgacaagatt
cgttcttggtcatatggtgaagtaaaaaaaccagaaacaattaactatcgtacattaaaa
ccagaaaaagatggtttattctgtgaacgtattttcggtcctacgaaagactgggaatgt
cactgtggtaaatacaaacgtgttcgctataaaggcgtagtttgtgaccgttgtggcgtt
gaagtaacacgtgcaaaagttcgtcgtgaacgtatgggtcacatcgaattagctgcacca
gtttctcatatttggtacttcaaaggtattccaagccgtatgggtcttattttagatatg
tctccacgtgctttagaagaagttatttacttcgcatcttacgttgtaattgaaccaggt
gctactaacttagagagcaagcaattactttctgaaaaagagtaccgtgcataccgtgaa
aaattcggtgcaactttcgaagcagcaatgggtgcagaagcaatcaaaaggcttcttggt
aaaatcgatcttgaagatgaaactcattctttaaaagaagagttaaaatcagcacaaggt
caacgccgtacacgtgcgattaaacgtcttgaagtagtagaatcattccgtaactcaggt
aactctccagagtggatgattttggatgtactacctgttattccaccggagcttcgtcca
atggttcaattagatggtggtcgttttgcaacatctgacttaaatgatttatatcgtcgt
gtaatcaaccgtaacaaccgtttaaaacgtttattagatcttggagcaccaagcattatc
gttcaaaacgaaaaacgtatgttacaagaagctgttgatgcattaatcgataacggtcgt
cgtggtcgtccagtaactggcccaggtaaccgtccgttaaaatctctttcacatatgtta
aaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactattctggt
cgttctgttatcgtagtaggtcctaacttaaaaatgtaccaatgtggtctaccaaaggaa
atggcgattgagctatttaaacctttcgtaatgaaagaattagtagaacgtggtcttgcg
cataatattaaatctgctaaacgtaaaatcgaacgtttaaacaacgacgtatgggacgtt
ttagaagatgtaatccgtgagcatccagtattactaaaccgtgcaccaacgcttcaccgt
cttggtatccaagcgtttgaaccaacacttgttgaaggccgtgcaatccgtcttcaccca
ttagtatgtacagcttacaacgctgacttcgatggtgaccaaatggcggttcacgtacca
ttatcagctgaagcacaagcagaagctcgtcttttaatgcttgctgcacaaaacatccta
aacccgaaagatggtaaacctgttgtaacaccatctcaagatatggtattaggtaactat
tatttaacacttgagcgcgaagatgctcgtggtgaaggttcaattttctatggaccaaac
gaagttttaatcgcatatgatacaggtcatgttcacttgcatacacgtatcgcgatcaaa
gcaagttcactgaacaacccaacgtttacagaagaacaaaataacatgttcttactaaca
actgtgggtaaagtaatctttaacgaaatcttgcctgaatcattcccgttcattaacgaa
cctactgatttcaacttagagcaagtaacaccagaaaaatacttcgctaacttaacaatt
gacgaagaaactttagcagagcttgaagcagatgctgcatacagccaattagatgaaaaa
ggtaaagtagaggcacaacgttcagcagtactacgcaaacattttgcatcagtacctgtt
gtaaacccattccgcaagaaattcttaggaaatatcattgcagaagtgtttaaacgtttc
cacattactgaaacatctaaaatgcttgaccgcatgaaaaacttaggtttcaaatactca
actcgcgctggtatcactgttggtgtatctgacatcgtggtattaccagacaaaggtgaa
atcctagctgaagcacaagagaaagtagataaagttcaagcgcaattccgtcgtggtttc
attacagaagaagagcgttatgaccgtgttatctctagctggagtgcagcgaaagatgaa
attcaatcaaaactgatgaagtcacttgagaaaacgaaccctatcttcatgatgtctgac
tcaggtgcccgtggtaacgcatctaactttacacagttagctggtatgcgtggtctgatg
gccaacccggctggtcgtattatcgaacttccaatcaaatcttcattccgtgaaggttta
acagtattggaatacttcatctcaacacatggtgctcgtaaaggtcttgccgatacagcc
ctaaaaactgccgattcaggttacttaacacgtcgtcttgttgacgttgcacaagatgta
atcgttcgtgaagatgattgtggaactgaccgcggcttaactatcggagcgttaatggaa
ggtacagaactaatcgaagcgttagacgaacgtattgttggtcgtcatacgaagaaaacg
attttccatccagaaacaggcgatgtaattttagaaaaagacggtttaatcgaccaagat
gtcgcgcgtgttattacagaagcaggtatcgaggaagtaacaatccgttcagcattcaca
tgtaatacaaaacatggtgtatgtaaaaaatgttacggcatgaacttagcaactggtgaa
aaagttgaagttggggaagctgttggtattattgctgctcaatcaatcggtgaaccaggt
actcagttaacaatgcgtacattccatacaggtggggtagctggagacgatattactcaa
ggtcttccacgtatccaagagattttcgaagcacgtaatccaaaaggtcaatctgtcatt
tctgagattgctggtacggtttcagatattactgaaattcgtgaaggtctaaaagaaatt
acagttcaaggtgacgtagaaactcgtaaataccaagcaccatataatgcacgtctgaaa
gttatcgaaggtgactcaatcgaacgtggtcaagtattaacagaaggttctatcgatcca
aaacaattattaaaagtaaaagacgtttcaacagttcaagaatatttactaaaagaagta
caaaaagtataccgtatgcaaggggtagaaattggagacaaacatatcgaagtaatggta
cgtcaaatgcttcgtaaagttcgtgtaatcgaagctggtgatacagaattattacctggt
tcattattagatattcaccaattctcagaggcaaatgtagatgctgttatgaacggcaaa
aaccctgcaacttgtcgcccagtaattctaggtattactaaagcttcactagaaactgaa
tcattcttatctgctgcatcattccaagaaacaactcgtgtgttaacagatgctgcaatt
aaaggtaaacgtgatgaacttctaggattaaaagagaacgtaattattggtaaacttgtt
ccagcaggtactggtatgcaacgttatcgtcaaatccgcattgaaaaagatgagcttgac
gcagaagatttagtttctgctgaataa
DBGET
integrated database retrieval system
