Protaetiibacter intestinalis: D7I47_04460
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Entry
D7I47_04460 CDS
T05661
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lyd
Protaetiibacter intestinalis
Pathway
lyd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lyd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D7I47_04460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyd03021
]
D7I47_04460 (rpoC)
03400 DNA repair and recombination proteins [BR:
lyd03400
]
D7I47_04460 (rpoC)
Enzymes [BR:
lyd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D7I47_04460 (rpoC)
Transcription machinery [BR:
lyd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D7I47_04460 (rpoC)
DNA repair and recombination proteins [BR:
lyd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D7I47_04460 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AYF97587
UniProt:
A0A387B5K3
LinkDB
All DBs
Position
complement(910476..914348)
Genome browser
AA seq
1290 aa
AA seq
DB search
MIDATTFDQLRIGLATSADIRAWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVINVDEDGRHADLPGLENELRLEVKALEQQRDDRINARLVQLEGD
LASLEEEGAKADQKRKVKDAGEKEMAQIRKSYDEQIGQLERVWEDFRNLKVGDLKPEDSV
FHELQDRYGLYFEAYMGAEAIQRRLQAFDLAAEAELLHDQIANGKGQKKIRAIKRLRVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCTAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVKEGAAGEGR
AFSSISEAILAKDEGTLDLNAKVRIRLEGVYLQDADEDFVQGSTKVLETTLGRALFNQAL
PVNYWYTDAVADKGKISAIVNDLAERYPKVEVAAALDRIKDAGFYWATRSGVTVALSDIV
TPKDKPAIVSKHEKQAAKIQGEFDKGLIDDATRRKELIDIWTEATNEIAASMQESYPKDN
NIFRMVSSGARGNWLQVRNISGIRGLVANPKGETIARPIISSYREGLSVAEYFIATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTTKGLELRIAVKVGDELVRDENVEN
SVYARSLAEDAVDAKGTVVAEAGSDVGDVLINELIAAGVETVKVRSVLTCESAVGVCAAC
YGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHQGGTAGADDITQGLPRVTELFE
ARTPKGASPIAEAAGRIEIEDTDKQRRIVLTPDNGDEPQIYPVLKRATLLVEDGQHVELG
QQFVVGNLDPKEVLRVQGVRAVQQHLVDGVQGVYRSQGVPIHDKHIEVIVRQMMRKVTVV
EHGDTDLLPGELVDRARYTELNRAAIVEGKKPASARQEVMGITKASLATESWLSAASFQE
TTRVLTQAAMEGRSDPLVGLKENVIIGQLIPAGTGLSKYRSVAVDATEEAKAERYPNRIF
ADDSAFSEADLSFVDFDSFSSDDFQPGTYN
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgcaaccactttcgatcagctccgcatcggcctcgcgacgagcgccgacatc
cgtgcctggtcgtacggcgaggtcaagaagccggagacgatcaactaccgcaccctgaag
cccgagaaggacggcctgttcggcgagcagatcttcggaccctcgcgcgactgggagtgc
tcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggcgtg
gaggtcaccaagagctccgtccgtcgtgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtcatcaacgtcgac
gaggacggccgtcacgccgacctccccggcctcgagaacgagctccggctcgaggtgaag
gcgctcgagcagcagcgcgacgaccgcatcaacgcgcgtctcgtgcagctcgagggcgac
ctcgcttctctcgaggaggagggcgccaaggccgaccagaagcgcaaggtgaaggacgcc
ggcgagaaggagatggcccagatccgcaagtcgtacgacgagcagatcggtcagctcgag
cgggtctgggaggacttccgcaacctcaaggtcggcgacctgaagccggaggactcggtc
ttccacgagctgcaggaccgctacggcctgtacttcgaggcgtacatgggcgccgaggcg
atccagcgtcgcctgcaggccttcgacctcgcggccgaggccgagctgctgcacgaccag
atcgccaacggcaagggccagaagaagatccgcgccatcaagcgcctccgggtcgtcaac
tcgttcctgcagaccggcaactcgccggccgccatggtgctcgacgtcgtgccggtgatc
ccgccggagctgcgcccgatggtgcagctcgacggcggccgcttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctgcgtcgtctgctcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggtcgcccggtcaccggtaccggcaaccgtgcgctcaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgtcagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcatcgtgggtccgcagctgaagctgcaccag
tgcggtctgccgaagcagatggcgctcgagctgttcaagccgttcgtcatcaagcgcctc
atcgacctgtcgcacgcgcagaacatcaaggccgccaagcgcatggtcgagcgttcgcgt
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcgccgacgctgcaccgtctcggcatccaggcgttcgagccgcagctcgtggagggcaag
gccatccagctgcacccgctcgtctgcacggcgttcaacgcggacttcgacggcgaccag
atggccgtgcaccttcccctctcggtggaggcgcaggccgaggcccgcatcctgatgctc
gcctcgaacaacatcctgaagccgtcggacggccgcccggtcaccctgcccagccaggac
atgatcatcggtctgcaccacctgaccacggtcaaggagggtgccgccggtgagggtcgc
gcgttcagctcgatctcggaggcgatcctggcgaaggacgagggcaccctcgacctgaac
gccaaggtgcgcatccgtctcgagggcgtgtacctccaggacgccgacgaggacttcgtg
cagggctcgaccaaggtgctcgagacgaccctcggtcgcgcgctgttcaaccaggcgctg
ccggtgaactactggtacaccgacgccgtcgccgacaagggcaagatctccgcgatcgtc
aacgacctcgcggagcgctaccccaaggtggaggtcgccgcggcgctcgaccgcatcaag
gacgccggcttctactgggccacgcgttcgggtgtgacggtcgcgctcagcgacatcgtc
accccgaaggacaagcccgccatcgtgtccaagcacgagaagcaggccgccaagatccag
ggcgagttcgacaagggtctcatcgacgacgcgacgcgccgcaaggagctcatcgacatc
tggaccgaggcgaccaacgagatcgccgcctcgatgcaggagagctacccgaaggacaac
aacatcttccggatggtgtcctccggtgcccgtggtaactggctgcaggtgcgcaacatc
tcgggtatccgcggcctcgtcgcgaacccgaagggtgagacgatcgcccgtccgatcatc
tcctcgtaccgcgagggtctgtcggtggcggagtacttcatcgccacgcacggtgcccgc
aagggtctcgccgacaccgccctccgcaccgcggactccgggtacctcacgcgtcgtctc
gtcgacgtctcgcaggatgtcatcatccgcgaggacgactgcggcacgaccaagggcctc
gagctgcggatcgcggtgaaggtgggcgacgagctcgtccgcgacgagaacgtggagaac
tcggtctacgcgcgctcgctcgccgaggacgcggtcgacgcgaagggcaccgtggtcgcg
gaggccggctcggacgtcggcgacgtgctcatcaacgagctcatcgccgcgggcgtcgag
accgtcaaggtgcgctccgtgctcacctgcgagtcggcggtcggcgtctgcgccgcctgc
tacggccgttcgctcgcgaccggcaagctcgtggacatcggcgaggcggtcggcatcatc
gccgcccagtcgatcggcgagcccggcacgcagctcaccatgcgtaccttccaccagggt
ggtaccgcgggtgcggacgacatcacgcagggtctgccgcgtgtcaccgagctcttcgag
gcccggaccccgaagggtgcgagcccgatcgcggaggccgccggtcgcatcgagatcgag
gacaccgacaagcagcgccgcatcgtcctcacgcccgacaacggcgacgagccgcagatc
taccccgtgctcaagcgcgccaccctcctcgtggaggacggccagcacgtggagctcggt
cagcagttcgtggtcggcaacctggacccgaaggaggtgctgcgcgtgcagggcgtccgc
gccgtgcagcagcacctggtcgacggcgtgcagggcgtctaccgcagccagggtgtgccg
atccacgacaagcacatcgaggtcatcgtgcgtcagatgatgcgcaaggtgaccgtcgtg
gagcacggcgacaccgacctgctgccgggcgagctcgtggaccgcgcgcggtacaccgag
ctcaaccgtgccgcgatcgtcgagggcaagaagcccgcgtcggcgcgtcaggaggtcatg
ggcatcacgaaggcgtcgctcgcgacggagtcgtggctgagtgccgcgtcgttccaggag
accacccgcgtgctcacgcaggcggcgatggagggtcgctccgacccgctcgtcggtctc
aaggagaacgtcatcatcggtcagctcatccccgcgggaaccggactctcgaagtaccgg
agcgtggcggtggacgcgaccgaggaggcgaaggcggagcggtaccccaaccgcatcttc
gccgacgactcggcgttctcggaggccgacctgagcttcgtcgacttcgacagcttcagc
tcggacgacttccagcccggtacctacaactag
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