Protaetiibacter intestinalis: D7I47_11335
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Entry
D7I47_11335 CDS
T05661
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lyd
Protaetiibacter intestinalis
Pathway
lyd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lyd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7I47_11335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lyd03021
]
D7I47_11335
03019 Messenger RNA biogenesis [BR:
lyd03019
]
D7I47_11335
Transcription machinery [BR:
lyd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
D7I47_11335
Messenger RNA biogenesis [BR:
lyd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D7I47_11335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AYF98783
UniProt:
A0A387B8V5
LinkDB
All DBs
Position
2394176..2396152
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AA seq
658 aa
AA seq
DB search
MTDTTIPADGAGNRAALSRLRLAELQALAAARGITGVSQMRKGDLVTTLSDLSETEGAPV
EDAPAEAPVEETPAPEEGATSEEAAPAEEAPVSEEQAPVEEPAAEEPAAEAPVAPARRGS
RRASAASADAAAIAAVLPTVTATEQPRRSAAQHAAQAELGLELDKLIPAAEAEGEAEGEA
QPSRRSRNRRGGRGQGAQNQGQQGQNQGGSAAEGDAEQPAEKSQGGQQGQNQGGQEGDGR
GRGRYRDRKRGGRGGVVDELDPEISDDDVLIPIAGILDVLDNYAFVRTTGYLPGPSDVYV
SLGQVKKYNLRKGDAVVGAIRQPRDGEQGSGRQKYNAIVKIDSVNGQTVDEAADRVDFGK
LTPIYPNERLRLETSPEKLSTRIIDLIAPIGKGQRGLIVAPPKAGKTLILQAIAKAIAVN
NPEVHIMVVLVDERPEEVTDMQRSVKGEVIASTFDRPAEDHTTVAELAIERAKRLVELGN
DVVVLLDSITRLGRAYNLASPASGRILSGGVDASALYPPKRFFGAARNIEGGGSLTILAT
ALVETGSKMDEVIFEEFKGTGNMELRLSRALADKRIFPAVDIYASSTRREEELLSADEVK
ITWRLRRALAGLELQQQLEVVLSKLKETGSNTEFLVQIQQSLPAGGGNGNGGAAHHKG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgacaccaccatccccgccgatggcgcggggaaccgcgccgcgctgagccggctg
cggctcgcggagctccaggctctcgccgccgcacgcggcatcaccggcgtttcccagatg
cgaaaaggagatctcgtgaccactctctccgacctttccgagaccgagggcgcacccgtc
gaggacgcccccgcggaggcacccgtcgaggagacccccgcacccgaggagggtgcgacg
agcgaggaggcagcccccgccgaggaggcgccggtctccgaggagcaggcgcccgtcgag
gagcccgccgctgaggagccggccgctgaggcgcccgtcgcccccgcccgccgcggctcg
cgtcgcgcgagcgccgcctccgccgacgccgcggcgatcgccgccgtcctgccgaccgtg
accgcgacggagcagccgcgccgcagcgccgcccagcacgccgcccaggccgagctcgga
ctcgagctcgacaagctcatcccggccgccgaggccgagggtgaggccgagggcgaggcc
cagccgagccgtcgcagccgcaaccgccgcggaggccgcgggcagggcgcccagaaccag
ggtcagcagggccagaaccagggcggctccgccgccgagggcgacgccgagcagcccgcc
gagaagtcgcagggcggccagcagggccagaaccagggcggccaggagggcgacggtcgg
ggccgaggccgctaccgcgaccgcaagcgcgggggccgcggcggggtcgtcgacgagctc
gacccggagatctccgacgacgacgtgctcatcccgatcgccggcatcctcgacgtgctc
gacaactacgccttcgtgcgcaccaccggctacctccccggcccgagcgacgtctacgtc
tcgctcggccaggtgaagaagtacaacctgcgcaagggcgacgccgtggtcggcgccatc
cgccagccgcgcgacggcgagcagggcagcggtcgccagaagtacaacgcgatcgtgaag
atcgactccgtcaacggccagaccgtcgacgaggccgcggaccgcgtcgacttcggcaag
ctcaccccgatctacccgaacgagcgcctgcgcctcgagacgagccctgagaagctctcg
acgcgcatcatcgacctcatcgcgccgatcggcaagggccagcgcggcctcatcgtcgcg
cccccgaaggcgggcaagacgctcatcctgcaggccatcgccaaggccatcgcggtcaac
aaccccgaggtccacatcatggtggtgctcgtggacgagcggcccgaagaggtcaccgac
atgcagcgctcggtgaagggcgaggtcatcgcctcgaccttcgaccgtcccgccgaggac
cacaccacggtcgcggagctcgcgatcgagcgcgcgaagcgcctcgtcgagctcggcaac
gacgtcgtcgtgctgctcgactcgatcacccgcctcggccgcgcctacaacctggcctcg
ccggcctccgggcgcatcctctccggcggcgtcgacgcctcggccctctacccgccgaag
cgcttcttcggcgcggcgcgcaacatcgagggcggcggttcgctgaccatcctcgcgacg
gcgctcgtcgagaccggctccaagatggacgaggtcatcttcgaggagttcaagggcacc
ggcaacatggagctgcggctctcgcgcgccctcgccgacaagcgcatcttcccggcggtc
gacatctacgcctcgagcacccgccgcgaggaggagctgctctcggccgacgaggtcaag
atcacctggcgtctgcgtcgcgcgctcgccggactcgaactgcagcagcagctcgaggtc
gtgttgtccaagctcaaggagaccggttccaacaccgagttcctcgtgcagatccagcag
tcgctccccgcgggcggcggcaacggcaacggcggcgcggcccaccacaagggctga
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